LOC103023286 (rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115)


Basic Information

Item Value
gene id LOC103023286
gene name rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7948922 ~ 8014625 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677950.1
AAAGACTTTCACAGGCAGGTGTGGAGAAGCTACTACAGCCGGGGACGGGTCTGAACCGTGGCTGCTGCAGGAGCAGGAGGACGCGGGGTGTGCCTCCTTTATTCCCCCGcgaggagaagagaagatagGAGAGGCATGCGGTAGCGGAGGAGCCGGAGGGAGCGGTGCACGATACGAGGGACGACGGACAGCGCGCGCCTTCACGTTTTGGACGCTCGCCGAACATGTCATGGAGGGAGTTGGTCTTAAAGCAGGATTTTCTCTGTGAGCAAACACGAGCTGAGGACCATGTCGGAGCAGGGTTATGGATTGACTCTATCTGCTGCACCCCCGCTTCGCAGAGGAAGCACCCCGCTACCAATCAAACACCAGCTAAAGCGGGAGGAGGCGGTCTCGGAGGACTATGATTGGACGCCAGGCGTACATGAGCCCGCCCATCCACCGGTCAGCAGCAGTGACACCACCCAGGACACACCCCCACCCCCTAAACCTCGACCACAGAAGTACCACGGACCCCTGAGAATCGTTCTGCTGGGGCAGAATGGCGTGGGCAAGTCCTCTCTGGCGCTGTCTCTCGCTGGGCTGTCTGACAGATCACTTTCCGTGGACTCTGAAACCCAAGCAAGCGatGAGGGGTATCAGCGGAGAGTGACCGTAGATGATGAGGATAGCTCCATCCTGGTGTATGATAACTGGAAGCAGGACCTGTCCACTCTGCAGTGCGAGGTGTGCATCCTGGTCTTCTCGCTGACAGACAGACGTAGCTTCCACCGCGTGGCTCAGATGCGCCTGCTGCTGAGGGAGAGCATCCCAAACACTCCCATCATCCTCGTGGGCAACAAGAGCGACCTGGTGCGCTCTCGAGAGATCAGCACGGAAGaggCCCACTCCAGCGCGATGGTATTCGACTGCCTGTACCTGGAGTTGTCCGTCTCCCTGGACCACCGCACGAACGAGCTGCTAGAGGCGGCGGTCAGGGCCGCCCGGGGCCACAGCCTGGGGCACGGCTGGACAGAGGGGTCCCCAGGAGCCGGCCGACGAGAAAGCCTGACCAGCAGGGCCAAGCGCTTTCTGTCCGGGCTGGTGCCGCGCTCCCACCACGGACGAGATAGGGACCGGGACAGGGACCGAGAGCGAGACCTCAGCAGACACCGGGCCAGCAGGATGCTGCGGCAGAAATCCCGCTCATGCCACGACCTCACCGCTCTGATgtaacgagagagagagagaaagagagaaagaggacagATAATGAGAGTGAGAGGACAGCATGTCCTCAGTGTCCCCAACTATAAAacaccttctttttttcttattttggtttggttggttttcAGAACTGACCATATCTGAGGAAGCAATACTGAGAATGTTCCACTTTTTAAAGGGATATCAATGGATTGATTAAGATATTGATGCAAAATTATAGTGATATATAGTATAAAGTGATGGTGTGACTTTAGGAGATGTACAGGGAGGATGCTGCTCCTGTCTTGAACTTTAGAACCTGTCTCTGAGTGCTTTGATGTAACAGGAAGAGAGGGTAAAAGAGCCAATGGACATTGAGGTAAGGATGATGTTTTTTTGATGTGGGAAATCCTTTAGTTTGACCCATATCGTCTGAAGACTAGACCATTGGTACAAATCAAACACTGTAGTGAAGTGTAGTGAGCATTTAAAAGGCTATAGACCAGTCAGTCATAAATTTaacaccacctccttgtttctacacttgtTGTACATCTTTTGTCcattggaaaatgaagtgtaacagtggcatggagtgctacagactagtagctct

Function

symbol description
rem2 Enables calcium channel regulator activity. Acts upstream of or within dopaminergic neuron differentiation. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in eye and optic tectum. Orthologous to human REM2 (RRAD and GEM like GTPase 2).

NR:

description
PREDICTED: GTP-binding protein REM 2-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677950.1 True 1804 mRNA 0.54 5 7948922 8014625

Neighbor

gene id symbol gene type direction distance location
carmil3 carmil3,lrrc16b coding upstream 37151 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 219608 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 231673 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 242380 7698361 ~ 7706542 (+)
LOC107197863 NA coding upstream 255146 7688107 ~ 7693776 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 117661 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 557208 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 1008472 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1104543 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1426067 9440692 ~ 9447133 (+)
G139750 NA non-coding upstream 380352 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 408979 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 441565 7507052 ~ 7507357 (+)
G139737 NA non-coding upstream 472576 7475970 ~ 7476346 (+)
G139712 NA non-coding upstream 745666 7202932 ~ 7203256 (+)
G139781 NA non-coding downstream 5821 8020446 ~ 8020933 (+)
G139782 NA non-coding downstream 7758 8022383 ~ 8035973 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 24270 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 47105 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 82673 8097298 ~ 8097743 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 902624 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1206853 6718238 ~ 6742069 (+)
G139282 NA other upstream 1681535 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1706351 6235434 ~ 6242571 (+)
G139268 NA other upstream 1784758 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1146708 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1205649 9220274 ~ 9223981 (+)
G140062 NA other downstream 1525150 9539775 ~ 9540810 (+)
G140103 NA other downstream 1729073 9743698 ~ 9745355 (+)
G140258 NA other downstream 1975293 9989918 ~ 9990296 (+)

Expression


Co-expression Network