G139952


Basic Information

Item Value
gene id G139952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8793861 ~ 8794207 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189420
gtgtcacgtcttagccctgtctcatgtctctgtgtgtcttccccacgtgacctgtgcctctctgtgtctcctgtcagtagatttccaccatgtgtttctcatttgtagctccgccccttcccctgttgtttcgtctctctctgtgtttcatagtttctcagtgtttcatagcctctgttcttCACGTCGTAGTTTCTATGTTTATCACTTGTtcatgtttctagtttcttgtttatttccgtctTCCTTGGCTCCTTgta

Function

GO: NA

KEGG:

id description
ko05144 Malaria
ko05143 African trypanosomiasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU189420 True 260 lncRNA 0.45 2 8793861 8794207

Neighbor

gene id symbol gene type direction distance location
LOC111194298 NA coding upstream 219950 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 284538 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 779236 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 882090 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 1064547 7721740 ~ 7729314 (+)
LOC103021839 NA coding downstream 228890 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 324961 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 646485 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 919356 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 988522 9782729 ~ 9794211 (+)
G139903 NA non-coding upstream 248832 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 249130 8544307 ~ 8544731 (+)
LOC111194297 NA non-coding upstream 279105 8512955 ~ 8514756 (+)
G139798 NA non-coding upstream 670518 8122039 ~ 8123343 (+)
G139792 NA non-coding upstream 696118 8097298 ~ 8097743 (+)
G139954 NA non-coding downstream 22155 8816362 ~ 8816858 (+)
G139958 NA non-coding downstream 166323 8960530 ~ 8983718 (+)
G140006 NA non-coding downstream 431766 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 644019 9438226 ~ 9439147 (+)
G140012 NA non-coding downstream 645226 9439433 ~ 9440213 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 1747563 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2051792 6718238 ~ 6742069 (+)
G139282 NA other upstream 2526474 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2551290 6235434 ~ 6242571 (+)
G139268 NA other upstream 2629697 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 367126 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 426067 9220274 ~ 9223981 (+)
G140062 NA other downstream 745568 9539775 ~ 9540810 (+)
G140103 NA other downstream 949491 9743698 ~ 9745355 (+)
G140258 NA other downstream 1195711 9989918 ~ 9990296 (+)

Expression


Co-expression Network