G139954


Basic Information

Item Value
gene id G139954
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8816362 ~ 8816858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189422
GCGCCTACGTATGCAGGACTTGAACCAATTCCATACAGATCTGGTGGTTCCAAAATTTGttaagaaaagacaagaaagCCTTGTGtttgtgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggtcaacaactacactacccagaatgcaccacctgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctccaggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttctcctcattacaaagcgttctatatctcttgtcttcagtttatcttgtgtatgaccttgcttttgttttctcgacgccgattattgcctttgcctctgatactggattgcttgtgtattacctggactgtgttttcactactgcctcttggattacctctgatattggatctctcgtgtatgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189422 True 497 lncRNA 0.46 1 8816362 8816858

Neighbor

gene id symbol gene type direction distance location
LOC111194298 NA coding upstream 242451 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 307039 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 801737 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 904591 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 1087048 7721740 ~ 7729314 (+)
LOC103021839 NA coding downstream 206239 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 302310 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 623834 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 896705 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 965871 9782729 ~ 9794211 (+)
G139952 NA non-coding upstream 22155 8793861 ~ 8794207 (+)
G139903 NA non-coding upstream 271333 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 271631 8544307 ~ 8544731 (+)
LOC111194297 NA non-coding upstream 301606 8512955 ~ 8514756 (+)
G139798 NA non-coding upstream 693019 8122039 ~ 8123343 (+)
G139958 NA non-coding downstream 143672 8960530 ~ 8983718 (+)
G140006 NA non-coding downstream 409115 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 621368 9438226 ~ 9439147 (+)
G140012 NA non-coding downstream 622575 9439433 ~ 9440213 (+)
LOC111194300 NA non-coding downstream 630276 9447134 ~ 9452566 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 1770064 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2074293 6718238 ~ 6742069 (+)
G139282 NA other upstream 2548975 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2573791 6235434 ~ 6242571 (+)
G139268 NA other upstream 2652198 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 344475 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 403416 9220274 ~ 9223981 (+)
G140062 NA other downstream 722917 9539775 ~ 9540810 (+)
G140103 NA other downstream 926840 9743698 ~ 9745355 (+)
G140258 NA other downstream 1173060 9989918 ~ 9990296 (+)

Expression


Co-expression Network