G145966


Basic Information

Item Value
gene id G145966
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31736796 ~ 31739792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197514
ATGTCAGGTTgcggggtgcagggaggacgaggaggcggacgcaaatgcaaacataaACGGGATTTATTAACGAAAACAGGATATACAATACACAGGGATTACTGAACACAGGACTGAGGAAAACgtggaaaacatggaacactgacagacgttaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgatgacagacaggaaacagggccaggaccttaca
>TU197516
ATGTCAGGTTgcggggtgcagggaggacgaggaggcggacgcaaatgcaaacataaACGGGATTTATTAACGAAAACAGGATATACAATACACAGGGATTACTGAACACAGGACTGAGGAAAACgtggaaaacatggaacactgacagacgttaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgatgacagacaggaaacagggccaggaccttaca
>TU197517
ATGTCAGGTTgcggggtgcagggaggacgaggaggcggacgcaaatgcaaacataaACGGGATTTATTAACGAAAACAGGATATACAATACACAGGGATTACTGAACACAGGACTGAGGAAAACgtggaaaacatggaacactgacagacgttaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgatgacagacaggaaacagggccaggaccttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197514 True 361 lncRNA 0.50 2 31736796 31739792
TU197516 False 361 lncRNA 0.50 2 31736796 31739792
TU197517 False 361 lncRNA 0.50 2 31736796 31739792

Neighbor

gene id symbol gene type direction distance location
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 28841 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 66667 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 117264 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 151823 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 170058 31563778 ~ 31566738 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding downstream 33712 31773504 ~ 31859657 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 194931 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2272690 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2288658 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2375349 34115141 ~ 34170245 (+)
G145875 NA non-coding upstream 86911 31648526 ~ 31649885 (+)
LOC111194381 NA non-coding upstream 103871 31627040 ~ 31632925 (+)
G145868 NA non-coding upstream 109834 31624722 ~ 31626962 (+)
G145859 ttc5,LOC107738047 non-coding upstream 168914 31566937 ~ 31567882 (+)
G145854 NA non-coding upstream 184687 31550533 ~ 31552109 (+)
G145969 NA non-coding downstream 17305 31757097 ~ 31757667 (+)
G145974 NA non-coding downstream 49153 31788945 ~ 31848894 (+)
G146034 NA non-coding downstream 267934 32007726 ~ 32012637 (+)
G146047 NA non-coding downstream 330131 32069923 ~ 32070179 (+)
G146053 NA non-coding downstream 336188 32075980 ~ 32076196 (+)
smim20 NA other upstream 17745 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 382352 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 514462 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 606773 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 821959 30911831 ~ 30914837 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 152734 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 331522 32071314 ~ 32071563 (+)
G146104 NA other downstream 872333 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1139898 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 2327789 34067581 ~ 34077975 (+)

Expression


Co-expression Network