trnae-uuc_22


Basic Information

Item Value
gene id trnae-uuc_22
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 32071314 ~ 32071563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197646
CTTTTTAGATTCTCGTCATCGTGCTCTTCTTCTACAGATCCTCCCATATGGTCTAACGCGTAGGATTTCTGGCTTTCATCCAGACGGTCCGGGTTCGAATCCCGGTATGGGAAGCTTTGGTTTTCAGCAACCTCAGAAACACAAGCCATTGCTCCGTTCTCTCGGTCCTTCACACATCTCGCTAACTCTTAAATACACATTTCACTCGCAGGCTTGCTGTGATTGCTCCATAGGAATAACAACCTTATTG
>trnae-uuc_22
TCCCATATGGTCTAACGCGTAGGATTTCTGGCTTTCATCCAGACGGTCCGGGTTCGAATCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197646 True 250 lncRNA 0.46 1 32071314 32071563
trnae-uuc_22 False 72 tRNA 0.53 1 32071355 32071426

Neighbor

gene id symbol gene type direction distance location
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 68831 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 211657 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 363359 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 401185 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 451782 31597346 ~ 31619532 (+)
dthd1 NA coding downstream 1940919 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 1956887 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2043578 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 2118071 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 2305159 34376722 ~ 34383744 (+)
G146047 NA non-coding upstream 1135 32069923 ~ 32070179 (+)
G146034 NA non-coding upstream 58677 32007726 ~ 32012637 (+)
G145974 NA non-coding upstream 222420 31788945 ~ 31848894 (+)
G145969 NA non-coding upstream 313647 31757097 ~ 31757667 (+)
G145966 NA non-coding upstream 331522 31736796 ~ 31739792 (+)
G146053 NA non-coding downstream 4417 32075980 ~ 32076196 (+)
G146062 NA non-coding downstream 179645 32251208 ~ 32251476 (+)
G146064 NA non-coding downstream 207614 32279177 ~ 32280251 (+)
G146065 NA non-coding downstream 214819 32286382 ~ 32286689 (+)
G146069 NA non-coding downstream 240723 32312286 ~ 32312542 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 144764 31892526 ~ 31926550 (+)
smim20 NA other upstream 352263 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 716870 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 848980 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 941291 31063439 ~ 31130023 (+)
G146104 NA other downstream 540562 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 808127 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 1996018 34067581 ~ 34077975 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 3328215 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 4419949 36491512 ~ 36494457 (+)

Expression


Co-expression Network