G145974


Basic Information

Item Value
gene id G145974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31788945 ~ 31848894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197526
cgaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattttaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
>TU197527
aaataaaaaaaaataaaagaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197526 True 448 lncRNA 0.01 2 31807569 31848894
TU197527 False 359 lncRNA 0.01 2 31788945 31807910

Neighbor

gene id symbol gene type direction distance location
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 80990 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 118816 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 169413 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 203972 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 222207 31563778 ~ 31566738 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 85829 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2163588 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2179556 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2266247 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 2340740 34189634 ~ 34191960 (+)
G145969 NA non-coding upstream 31278 31757097 ~ 31757667 (+)
G145966 NA non-coding upstream 49153 31736796 ~ 31739792 (+)
G145968 NA non-coding upstream 49838 31738782 ~ 31739107 (+)
G145875 NA non-coding upstream 139060 31648526 ~ 31649885 (+)
LOC111194381 NA non-coding upstream 156020 31627040 ~ 31632925 (+)
G146034 NA non-coding downstream 158832 32007726 ~ 32012637 (+)
G146047 NA non-coding downstream 221029 32069923 ~ 32070179 (+)
G146053 NA non-coding downstream 227086 32075980 ~ 32076196 (+)
G146062 NA non-coding downstream 402314 32251208 ~ 32251476 (+)
G146064 NA non-coding downstream 430283 32279177 ~ 32280251 (+)
smim20 NA other upstream 69894 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 434501 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 566611 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 658922 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 874108 30911831 ~ 30914837 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 43632 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 222420 32071314 ~ 32071563 (+)
G146104 NA other downstream 763231 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1030796 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 2218687 34067581 ~ 34077975 (+)

Expression


Co-expression Network