G145968


Basic Information

Item Value
gene id G145968
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31738782 ~ 31739107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197519
ccggccgggctggagagctggaagccggtcgGGCTGGACAGCGTGGTggagctagcaggctagctagcttagctggagcttcagagagcggcgctgccgccgccgctgtctcggggagcggcgcggccaccgctgaagtctcggggagcggctgagccacgggagtcacggggCGTGGAGCCTCAGTCGCGTGCTTCTTggagcgcggcgtctcggccgggAAAGTCACCGAGCGCGGGTAGAGTACagcccctgggggaaacggcaatggagtacgggctggtgcgggatagagctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197519 True 299 lncRNA 0.70 2 31738782 31739107

Neighbor

gene id symbol gene type direction distance location
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 30827 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 68653 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 119250 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 153809 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 172044 31563778 ~ 31566738 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding downstream 34397 31773504 ~ 31859657 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 195616 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2273375 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2289343 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2376034 34115141 ~ 34170245 (+)
G145875 NA non-coding upstream 88897 31648526 ~ 31649885 (+)
LOC111194381 NA non-coding upstream 105857 31627040 ~ 31632925 (+)
G145868 NA non-coding upstream 111820 31624722 ~ 31626962 (+)
G145859 ttc5,LOC107738047 non-coding upstream 170900 31566937 ~ 31567882 (+)
G145854 NA non-coding upstream 186673 31550533 ~ 31552109 (+)
G145969 NA non-coding downstream 17990 31757097 ~ 31757667 (+)
G145974 NA non-coding downstream 49838 31788945 ~ 31848894 (+)
G146034 NA non-coding downstream 268619 32007726 ~ 32012637 (+)
G146047 NA non-coding downstream 330816 32069923 ~ 32070179 (+)
G146053 NA non-coding downstream 336873 32075980 ~ 32076196 (+)
smim20 NA other upstream 19731 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 384338 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 516448 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 608759 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 823945 30911831 ~ 30914837 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 153419 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 332207 32071314 ~ 32071563 (+)
G146104 NA other downstream 873018 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1140583 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 2328474 34067581 ~ 34077975 (+)

Expression


Co-expression Network