LOC103028651 (tmem88,LOC108410821,LOC107597044,LOC107664278,LOC107719780,LOC106525123)


Basic Information

Item Value
gene id LOC103028651
gene name tmem88,LOC108410821,LOC107597044,LOC107664278,LOC107719780,LOC106525123
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40603923 ~ 40610409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250146.3
CAGAGTGGGGGGTGGTCTCAGAGGGCAGGGAAAGCTGAGGGGCAAGGAAAGGCATCTCTATATCTGCCTAACTGACCACATTCAGCTTACAGTTTATCCTGGAACAGCAGAAGAGATGAGAGAGTGAGGACGAGAGTGCTGAGAAAGCCGTGAAAaatactacacactaatactaaTAAGCTATTGAACATTCATCAAAAGCCTAAGGAACAGGAGGTGACTACAAGAGACCATCCAAGAGAAAAGGTGAAACAGAAAAGAGACTGGGACTCAAACACTGCCAGAAAGAAAATCTACGGAACATCAAATGTGATCATTTTCAACAGCTTGTGCTAAAATTCTATTCGCTTTAAAGTTAAGGAGTCAGCAAAGATTTAACTACTTCAAAAGAGAGATCTGCTGCAAGCGCTGGAAGAGGACTACCAGGCTCCACGCCACACGGTCACCATGAGTCTAAACGGCACTCTTGAAAAAGGAGCCCACCACCAAGTTCTGGATCTATCTGAGGAGCTTCCTCCCCACAACCAtcttcaccatcatcatcagcagctgcagcagcagtccCACCTTCAGCACAGCAACTCCCTGGCCTCCACAGCTAGGGCTGGGACGCCTGTCAGTGGGTCAGGGGTTGTGGTGCCTCCCCCATATTCCACAGCAGAGATTGGAAGTGGTGAGGCCCCTTTAGAGCTGAGGGGGTCTCTGGACTGCTGGGCATGTTCAGTGCTGGTTACGGCGCAGAATCTGGTGATAGCTGCCATCAATGCGTGCCTGGCCGGCCTGGTGTTCGGCCTGATCCTAACACCCGCCACAGTCATGGTGGTGTTTGGATTTCTTTGCCACTCCACTGTGCGCCCACACGGAAAAATCGCCTACTGCTCGGACCTGCTCAGCGATGGGGGATGTGTGGCGCTGTTAGTGGTGGGCTTCCTCCTCGTCACCCCACTCCTGGTCCTGGCACTGGCTGCGTACTGCAGACTGGCTCGTCACCTCCAGCTAGGCCTCTGCTTCATCCCGTACAGTCGTGCCGTCTATAAGAACCTGCCTGCCACACAGCACCGTGGTCTAGGAGGGGGCTGCTGTGGTCAGCGGGAAGGTATAGAGGGTGGAAAAGGAAAAGTGTGGGTATGAGAAAAAAGAGGTGGGTGGAAGAGGGTCACCCCAGTGGAGGGTCTCCTTATGGtaatacatttcttttattgttccaatacatttttgttcttGTAGTAATGTACAGCGCATTGCAAGACACAGAATAACAAACTATTATTAGACAATAcaccatttatattttttgctagtttttttatatttttattatatttatccaTGCTTTGaatacttataaatatttacctaCAATTCCTGTTTAAAAAGCTGTGCAGTCCAGGATTTAGACCT

Function

symbol description
tmem88 Predicted to enable PDZ domain binding activity. Involved in negative regulation of canonical Wnt signaling pathway; protein localization to plasma membrane; and protein stabilization. Located in cytosol and plasma membrane.

NR:

description
transmembrane protein 88

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250146.3 True 1401 mRNA 0.49 3 40603923 40610409

Neighbor

gene id symbol gene type direction distance location
kdm6b kdm6b,kdm6ba,LOC107707072,LOC107675439,LOC106577775 coding upstream 11217 40543670 ~ 40592706 (+)
dnah2 dnah2 coding upstream 136429 40233676 ~ 40467494 (+)
LOC103029487 NA coding upstream 383366 40185065 ~ 40220557 (+)
efnb3 efnb3,efnb3b,LOC107597046 coding upstream 558399 39929274 ~ 40045524 (+)
LOC103029815 NA coding upstream 676989 39915343 ~ 39926934 (+)
trnak-cuu_2 NA coding downstream 1301 40611710 ~ 40611782 (+)
trnak-cuu_3 NA coding downstream 1720 40612129 ~ 40612201 (+)
trnak-cuu_4 NA coding downstream 2139 40612548 ~ 40612620 (+)
trnak-cuu_5 NA coding downstream 2558 40612967 ~ 40613039 (+)
trnak-cuu_6 NA coding downstream 2977 40613386 ~ 40613458 (+)
G147984 NA non-coding upstream 67281 40534279 ~ 40536642 (+)
G147995 NA non-coding upstream 71243 40516040 ~ 40532680 (+)
LOC111194400 NA non-coding upstream 97333 40470297 ~ 40506590 (+)
G147993 NA non-coding upstream 103640 40493836 ~ 40500283 (+)
G147846 NA non-coding upstream 511536 39997153 ~ 40092387 (+)
G148038 NA non-coding downstream 20149 40630558 ~ 40633451 (+)
G148037 NA non-coding downstream 21835 40632244 ~ 40640870 (+)
G148084 NA non-coding downstream 213711 40824120 ~ 40826574 (+)
G148086 LOC108411458 non-coding downstream 221978 40832387 ~ 40833149 (+)
LOC111194222 NA non-coding downstream 296166 40906575 ~ 40908153 (+)
G147592 NA other upstream 1452723 39147599 ~ 39151200 (+)
G147496 NA other upstream 1988568 38614878 ~ 38615355 (+)
c16h4orf48 cunh4orf48 other upstream 3561696 37038935 ~ 37042227 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other upstream 3884636 36690693 ~ 36719287 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other upstream 4109466 36491512 ~ 36494457 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other downstream 56831 40667240 ~ 40694778 (+)
G148036 NA other downstream 150989 40761398 ~ 40787138 (+)
LOC103041218 LOC108411459,LOC108267979 other downstream 225915 40836324 ~ 40870513 (+)
LOC107197094 NA other downstream 284135 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 386669 40997078 ~ 41000503 (+)

Expression


Co-expression Network