brinp2 (brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070)


Basic Information

Item Value
gene id brinp2
gene name brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 286350 ~ 423788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677735.1
GACTCGCTGTCGGTTCCGCGCGCGCTGCCCCAGAGCTGAGAGCGCGCGTGTCCGGGTGGAGGTCACGGACGGCTTCAACGGAGGCGCGAGCGGGCTGTCCGCGAAGAGCACGCGGAGGAGGACAGCGTGCGCGCGCGCTTGTTTGTTTGCGGGTTTGTTACCGGATCCGCGTGGATTTACCTGCGTCCCACCTGCCCCGAGCCCCGAGCGCCGCCGCCGCCGTGCGCGCGCTCCTGCCGGcgcgccgccgccgctgctgctgtcCGCGCGCTCGAGCTGACCGGATCACCGGGACCGGGACTTTCACTTTCACCGGATGAATatacttgtttatttttcattcaataacaaaaatattgaaacaatgaaaaataaaaatgaactttcTGTTTTTTGACGGAattcatttgaaatttaagggaAACTTTTTTTCGCCGGTGCTTTCTCTCCGGTTCCGCGCGCGCCCGGACTCCAGTACTCCCAGTACtgatggtgtgtgttggtgcggGATGGGTTCCTCTCAGGTAAACGGGAGTGTCATCTTCATGACAGTGACTGGATTACCGTGTCCTCGCGCAGGAGGAGGCTGCTGAgggggaggaggaagaggaggaggaggaagagcagaATCAGGAGCGCGAGCCGCAGCATTCCTCCACTTACACCCCGAGCTCTGCCCCGCGCGATCCGGTGGGACTGGAGCTGAACTGGGAGAGGGTGCAGTCAGCCTTCCAGTCTGGGTCTCGCGGGATTGGCAGAAGAATGCTGGTCCCAGGTACCCGGCGGCAGGATGGCGTTGAGTTGGCCGAGAGCCGTGGTCGTTAGGTGGTTCCTCTCGATGCTCCTGTGGCACTGGGCACCTCTGGCTCCTCTGAGTTGGCTTCTGGCGGCGGCTGAGCGCCTGGACCACAACCCGTCCCCGTTCTTCTCGGTGTCCGGCCGGAGCAGCGGGCACCTGGACTGGCTCCTCTCTGATAAAGGACCCTTCCACCGCTGCCCGGAGTACACCGAGTTCAAGGAGCGCTTTCAGCAGGGCTTCACCACCCGCTACAAGATCTACAGGGAATTCAGCCACTGGAAAGTGAACAGCTTGGCCACGGAGAAGAGGGATTTCTTCAAGGCGCCGCTGCCTCTCGCTCCGGAGTTCTTACGAAACCTCAGGCTGCTGGGGAGGAGGCCGAGTCTCCAGCAGATCCACGAAAACCTCATCAAAAAATATGGCACTCATTTCCTGGTATCGGCTACGCTGGGAGGGGAGGAGTCGCTCACCATCTTCCTGGACAAGCAGAAGCTCAGCAAGAAGTCTGAAGGGAGCGGGAACAGCTCGGTGGTTTCTCTGGAAGTCCTGCACCAGCTGGCAGCTTCCTACTTCACCGACCGAGAGAGCACCCTTAGGAGACTGCACCACCTCCAGATCGCCACCTCTGCCATCAAGGTAACAGAGACCAGAACGGGTCCTCTCGGATGCAGCAACTACGACAGTCTGGACTCGGTCAGCTCGGTGTTGGTGCACAGCCCGGAGAATAAAATACACCTGAAAGGTTTACAGGATGTGCTGCCGGATTTCCTGCGGAATCGCTTCGTGGAGGCGGCGCTCAGCTATGTGGCCTGTAATTCGGAGGGTGAACTGCTGTGCCGGAGTAATGACTGCTGGTGCCAGTGCTCTGCAAAGTTCCCCGACTGTAACTGCCCCTTCACCGACATTAAAGCCATGGAAGACAGTCTGAGGAAGAGTAAAGAGTCCTGGGTAGCCTCCAACAACGAGTTCATCGAGTCAGACGAGTTCAAAGCGTTCCTGAAGAAACTGCCCACCGATCACTTCCTGAACACCTCGGCCATCTTGCGGTTCTGGAGCTCTGACCCGGCTCTGCAGCGGCGCCACGGCCTGCTGGAGACCGGAACCAGACTGATCCTGGGAAAAGCCCAGAAGATCGTACGCAAACTCTTCACCCTCAGCAAGCGCTGCCCTAAACAGCCAAAGATCAGCCTGCCCAGAGACAGGACTCTGGGGTTCTGGCTGAACCGGGTTCAGTCTCTGCTGTACTGTAACGAGCACGGCGTCCCGGGCTCTTTCTCCGAGGAGGCGCAGGGGTGCGTGTGTTTCTCCGAGCAGAGCGGCAGCTGCCAGGGCACCGTCCCGTGCCGGGTGGGCGAGAGCACCCTGTGCCTGCTGTGCGCTCCGGACAACATCACCCGCTGTGGGACGTGCCTGCCCGGCAGCGTCCTGCACACGGGGTCCTGCCGGCCCAACATCGCCAACTCCCTGGACCACTACGTCAACTTTGACCTGGACATGCCGGACGCGGAGGCGCGCCACCTCCTGCACCGTCTGGACAGCCGCATGGAGGTCCACGCCATCTACATCAGCAACGACGTGCGCCTGGGCAGCTGGTTCAACCCGGCGTGGCGCAAACGCATGCTCCTGACGCTCAAGAGCAACAAGAACAAGTCCAACCTCATCCACATGCTGATGGGGATCTCCTTCCAGATATGTTCCACCAAGAACAGCACGCTGGAGCCCGTGCCTGCCATCTACGTCAACCCCTTCGGGGGGAGCCACTCCGAGAGCTGGTTCATGCCGGTCAACCAGCAGGACTTTCCCGACTGGGAGCGAACCAGGCTGGACTCGTCCCTGCAGTGCTACAACTGGACGCTAATGCTGGGCGGCAAGTGGAAGTCCTTCTTCGAGACGGTGCACATCTACCTGCGCAGCCGCATCCTCACCGACGACCCGACCGTCAACGAGACGCTCTTCTACGAGCCGCTGGACCCGGACGACCGCTCCGCCAACCTGGGCTACATGAAGATCAACAGCCTGAAGGTCTTCGGCTACAGCATGCACTTCGACGCCGAGGGCATCAAGGACCTGATCCTGCAGCTGGACTACCCGTACGCGCAGGGCTCGCAGGACGCCACCTTCCTCATGCTGCTGGAGATGCGAGACCGCATCAACCGCCTCTCGCCGCCCGCCGCCCAGCCGCTGGACCTGTTCTCCTGCCTGCTCAGGCACCGGCTCAAGCTGTCGGCCGGGGAGGTGGCTCGCGTCCGGGACTCCCTGCAGAGCTTCAGCGCCAAGCTGCCCAACTCCCCCGAGCCCGAACTCGGCCAGCTGTGCAGCTAGCCTGGCTAATGCTAGGCTGGCTAATGCTAGCCCGGCTAGTGCTAGCCTGGCTAATCCTCCCCCGGCCTCTCCGGCGCGGGCGGCGCGAATGTGACCGAAGGACGGGAATATGACAGGGAATGCCATGTTATTCGAAATTCGGGAATGAGTGAATACGGTGTTCTGATTGGGTCGACAGGATTTCGACCGTTTCAGAAACAACGTTCAGCAGTTTCCCTTTCTCTGGGCGAAAAactcaacgaataaaaacgtgAGGTGTGACTGACACGTGGAGGACGCTGAGTACAGAGAGCGCTGTGTATCTGAATGCTCACCGAATTCAACACGGACCAAACCAAGCTACGCTCCTGAGCTACTTCTGTACGCCTGGAAATAAAGATATatagagaatgaaagagagataaagagataaagagataaagaggtaAACCGGGACTCGTCTCCTCTCGCGTATCTGAAAATGTCGATGTTTTTGGTGATGTCATTGTTCAACTTGAAAAGGGGGGTGAAAACGTGCTCCATTCGGATTCATATTTCGTGTCTGGAGAGGGAAGGTCACTCAGTGATCACAATCAGTGCAGGGGTTTACCgtgattttctattttatcttAAATCCTGAATCCTGTATGgagagctgtatatctgtattTAACGCTGGAGTGAGATCCCGTAAAGGAAGCTTTGTATTCAGAGATTTTATCAGAGGCTAAACCAAAAGGCAAACAAACGAACAAACGAATGAACGAACGTGGAGTCGAGCTGAGCGGCgaaatgtctgtttttaaatgtccacagatgttttctctctctctctttttttttgagatgttgCTTAAGATAACACATGACATCATTTTGAAAAAGGTTGGTGTGCAGCTTTGTATATTCTGCTCCTCCGTCATCGATCCTCATTTAGGACGCAGTGAAAGCTGCACGACGCTTCTTGAATATAACTGGTTGAACATTCTTCTAAAATTTGTACTTTTTGAAAAGTGCAAAgaccaaaaacatttcatacacgacgaaaaaaaggaaaaacaaaaaaaatctattgccTTATAACGTGGAGTCTATGTTCGGATATCGAAGCACACTCGGTCGGCTtgttactctttctctctctctctttaaacctttttactttttactcctTTTTGCAC

Function

symbol description
brinp2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677735.1 True 4281 mRNA 0.56 8 286350 423788

Neighbor

gene id symbol gene type direction distance location
cenpl cenpl coding downstream 109684 173241 ~ 176666 (-)
eif2b3 eif2b3,ei2bg,LOC107720854,LOC107700990,LOC107722074,LOC107599900 coding downstream 140145 127085 ~ 146205 (-)
LOC103021456 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076 coding downstream 162678 95083 ~ 123672 (-)
LOC111194215 NA coding downstream 196820 88370 ~ 89530 (-)
pappa2 NA coding upstream 294235 718023 ~ 750580 (-)
tnn NA coding upstream 568105 991893 ~ 1026466 (-)
trove2 trove2 coding upstream 666449 1090237 ~ 1102807 (-)
shh shh,LOC108411758 coding upstream 921276 1345064 ~ 1360413 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding upstream 1031665 1455453 ~ 1487674 (-)
G137659 NA non-coding downstream 92352 193354 ~ 193998 (-)
G137648 klhl20,LOC102300935 non-coding downstream 122405 161696 ~ 163945 (-)
G137646 NA non-coding downstream 152054 133158 ~ 134296 (-)
G137611 NA non-coding downstream 207987 75676 ~ 78363 (-)
G137610 NA non-coding downstream 216605 68959 ~ 69745 (-)
G137721 NA non-coding upstream 2447 426235 ~ 426528 (-)
G138136 NA non-coding upstream 61909 485697 ~ 506438 (-)
G138160 rfwd2,LOC107658354,LOC107726924 non-coding upstream 351831 775619 ~ 780533 (-)
G138166 NA non-coding upstream 434160 857948 ~ 864771 (-)
G138195 NA non-coding upstream 614079 1037867 ~ 1039082 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 272115 695903 ~ 717323 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 626744 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 2053907 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2626612 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2671813 3095601 ~ 3114686 (-)

Expression


Co-expression Network