LOC111194275


Basic Information

Item Value
gene id LOC111194275
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4752573 ~ 4754327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651009.1
TCCAAAGAGAGGCTAATTTCAGCTTTAGAGTTAATTTCTCTGCCATTAAGTTGTAGAGAggtaaaaatactgaaataagtAGAATAGCCATAGTTCAGTGCTTTACTGCCATCTTCTGGATAGTGTGTAGCTACAGCTGTTTTATAGCTTTTATAAGGTTTATCTGTGCTGAATGTCTGCAGTGTGTTTCGGGCTGTGGATGCTCGGCTGGTTGGTTAAGTCTCGTTTGGAACATGGCTACTTCTGTTAGCATTTCCattaactaagctaagctaagctaagataagCTAAACTACCTGGTTTAAGACTTTAACACGAGTAAACATGGTCGAGAATAAGTTGATTTTAAACTATTTTCGCCGCCAAAACGAGGCAAAAGTGGAGATTGATCCAACAGCAGTGCTGAGCTTCATTCCTTCAATGAATAAGGAGTTTCTGTCTCTGTTGGGTTTGGAAGAAGTGGTTCAGTTCCGCTTAGAGCTGTTGGACAAATTCGAGTACAATGTGCCCAAAAGACGAAAAGGAAAGGGTATGAATATCTTGTTCAGTAAACTGAAGAGTaatattattgattatattgatAGATGAAGCTTGGAAAAGGTGTTTTGTAAATTGTGGCGTTATGGTATTTCttcttttagttattttaattgAAGAAAAATACTTTAGCAGCGAGGAACTTTTGGTGTTCATGACGTTCCAAGGTAAAGCTCGTCCAAACCAGCAGCCATTTATTATCCTTGCAGGGTATACTCACTCCACAGAGTTGAGAGTTCCCTTGCTACTGTCCTATTCAATTTCCATTAGGTGTTAATTATTGTTAACTCATGAAATTACGCAATCGTCACACAAGCTCCCAAGTAGATCTGGGTTCAGATAGCTTCCAAACTCGCTGCGGTCTACTCCCAAGTCCAAGATGGGAAACTTGTGCAGGAAATGTcact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651009.1 True 944 lncRNA 0.39 2 4752573 4754327

Neighbor

gene id symbol gene type direction distance location
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 3820 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 25045 4723386 ~ 4727528 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding downstream 207085 4530536 ~ 4545488 (-)
LOC103036885 LOC103036885,LOC108428857 coding downstream 266588 4484233 ~ 4485985 (-)
LOC103026217 nos1apb,LOC108428842 coding downstream 276656 4459769 ~ 4475917 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding upstream 7426 4761753 ~ 4767293 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 17466 4771793 ~ 4805667 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding upstream 277092 5031419 ~ 5045009 (-)
ccdc24 NA coding upstream 812857 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 870532 5624859 ~ 5898800 (-)
G139011 NA non-coding downstream 45048 4706213 ~ 4707525 (-)
G138919 NA non-coding downstream 330978 4420864 ~ 4421595 (-)
G138913 NA non-coding downstream 355641 4396090 ~ 4396932 (-)
G138910 NA non-coding downstream 401447 4332394 ~ 4351126 (-)
G138837 NA non-coding downstream 518391 4179824 ~ 4234182 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 66876 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 81455 4835782 ~ 4836531 (-)
G139003 NA non-coding upstream 84539 4838866 ~ 4854692 (-)
G139043 NA non-coding upstream 251165 5005492 ~ 5006291 (-)
G139040 NA non-coding upstream 273593 5027920 ~ 5028705 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 414376 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 891217 3847722 ~ 3861356 (-)
G138708 NA other downstream 918903 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1577220 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1637887 3095601 ~ 3114686 (-)
G139074 NA other upstream 521779 5276106 ~ 5276468 (-)
G139105 NA other upstream 575751 5330078 ~ 5330805 (-)
G139489 NA other upstream 1254726 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1268282 6022609 ~ 6054733 (-)
G139487 NA other upstream 1550642 6304969 ~ 6374709 (-)

Expression


Co-expression Network