G91339 (cnot10)


Basic Information

Item Value
gene id G91339
gene name cnot10
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 16432867 ~ 16435280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122828
ttttattgtcattaatgTCTGCTTCAACGTGCCAGTGGTTGCTTGCCCACTTTTGTAGAACTCAGCAACAGCTTTGTTCAGGGCTATCTTATAGTCCTCCTTGTTCAGTTCCTGAAGACTTTCGAGTTGTTTTAAGGAATCATCGTAGTTGCCGGCCGTAAATGCTTCAAAAGCATTCGTGGCCATCTCCTTCTCTTGGTCTGAAATTCCAGGGGAAGAAGCGTTGTCATGTTTCATGTCACCAACTTGGTCTGAGCCGCTCTCAGCCATGTCCTGCCAGTGATTCTCTGGTATGAATTAACGCGTGTTAATTCCAGTGATcagactctcacacacagatCCTCTCCGTTTATCTAACTTATATATAGATCCAGCACAGGGTTCATCAGTGCGTAGCCGCTGCTACTGCTCTGCTTTCGCTTCATCCAGGATTTTTGTAATGAGAATTAGAGCACAAGCTGCTGCAGTCCG

Function

symbol description
cnot10 Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT10 (CCR4-NOT transcription complex subunit 10).

NR:

description
CCR4-NOT transcription complex subunit 10 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122828 True 471 lncRNA 0.45 3 16432867 16435280

Neighbor

gene id symbol gene type direction distance location
tcaim tcaim,LOC107751885,LOC107704100,LOC107601675 coding upstream 50478 16373712 ~ 16382389 (+)
abhd5 abhd5,LOC107657580 coding upstream 128562 16294469 ~ 16304305 (+)
snrk snrk,snrka,LOC107551216,LOC107723077,LOC107657578,LOC107704097,LOC107751880 coding upstream 185121 16201385 ~ 16247746 (+)
fam198a NA coding upstream 274183 16122851 ~ 16158684 (+)
entpd3 entpd3 coding upstream 311176 16104783 ~ 16121691 (+)
LOC103035015 cck coding downstream 60 16435340 ~ 16481411 (+)
ulk4 ulk4,LOC107668185,LOC107564876 coding downstream 123596 16558876 ~ 16680559 (+)
cmtm8 NA coding downstream 310292 16745572 ~ 16748700 (+)
LOC103040229 ptprub,LOC108441315,LOC107704844 coding downstream 393940 16829220 ~ 16941407 (+)
LOC103041278 serinc2l,LOC103041278,LOC107587884,LOC108269842,LOC108443421,LOC107732828,LOC107704843,LOC107597105 coding downstream 805272 17240552 ~ 17252697 (+)
G91312 NA non-coding upstream 49664 16382584 ~ 16383203 (+)
G91306 NA non-coding upstream 63428 16369149 ~ 16369439 (+)
LOC107197645 NA non-coding upstream 63780 16342546 ~ 16369087 (+)
G91309 NA non-coding upstream 69185 16363472 ~ 16363682 (+)
G91280 NA non-coding upstream 234730 16197806 ~ 16198137 (+)
G91350 trak1 non-coding downstream 57715 16492995 ~ 16496357 (+)
G91366 ctnnb1 non-coding downstream 250258 16685538 ~ 16691936 (+)
LOC103037726 NA non-coding downstream 256749 16692029 ~ 16786630 (+)
G91385 NA non-coding downstream 343372 16778652 ~ 16807996 (+)
G91486 NA non-coding downstream 756001 17191281 ~ 17191583 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 13487 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 1149812 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 1216359 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 1659500 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 1780585 14645798 ~ 14652282 (+)
rcc1 NA other downstream 923559 17358839 ~ 17447933 (+)
G91678 NA other downstream 1476621 17911901 ~ 17912443 (+)
G91728 NA other downstream 1912747 18348027 ~ 18361095 (+)
G91748 NA other downstream 1965208 18400488 ~ 18421263 (+)
G91760 NA other downstream 2056400 18491680 ~ 18492072 (+)

Expression


Co-expression Network