snrk (snrk,snrka,LOC107551216,LOC107723077,LOC107657578,LOC107704097,LOC107751880)


Basic Information

Item Value
gene id snrk
gene name snrk,snrka,LOC107551216,LOC107723077,LOC107657578,LOC107704097,LOC107751880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 16201385 ~ 16247746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250417.3
CGATTTCGCTGAGAGCAGCAGTtacttccctccctccctccagcAGCGTTTGCAGCACATTTATCAGGAACCGTGTGAGCGCCGCCACGGCAAATCCGGAGCGCTCAACTTCATTCAGAAGTCTTTCGCTGAGCGCCTTCAAATCTGGATCAAAAAGTCGCCTTTGTCCTGGCGTATTTTGCATTTTCGCCATTTTTAATGTTCGCCAGAGCGATCGGAGCCTGGCATCATGGGTTTGCTGTTACCAGCCAATGTGCTGAAGTGAGCTGGACCCTCCCTCCACTGTAAACTCTTCCCCTCCCCCAGGGGTTTAACCCCTCCTCCCAGCCAAAGGGGGACCAGCGGCCATGGCGGGCATAAAGCGCGGCTACGATGGCAAGATCGCCGGACTCTACGACCTGGACAAGACGCTGGGCCGTGGGCACTTCGCGGTGGTCAAACTGGCACGCCATGTTTTCACTGGGGAGAAAGTAGCAGTGAAGGTCATAGACAAGACCAAGCTTGACACGGTTGCCACTGGTCACCTGTTTCAGGAGGTCCGCTGCATGAAACTGGTGCAGCACCCCAACATTGTGCGGCTGTATGAAGTCATCGACACGCAGACCAAGCTCTACCTGATCCTGGAACTGGGGGACGGAGGGGACATGTTTGACTACATCATGAAACATGAGGAGGGTCTGAACGAGGAGCTGGCTAAGAAATACTTTGCTCAGATCGTTCATGCTATCTCTTACTGTCACCGACTGCATGTGGTGCACCGTGACCTGAAGCCTGAGAATGTGGTGTTCTTTGAGAAGCAGGGCTTGGTCAAGCTGACGGACTTTGGCTTTAGCAATAAGTTTCAGCCAGGGAAGAAGCTGACGACCAGCTGCGGCTCGTTGGCCTACTCTGCTCCGGAGATTCTGCTGGGGGATGAGTATGACGCACCTGCAGTTGATATCTGGAGCCTAGGAGTGATCCTCTTCATGCTGGTTTGCGGACAGCCTCCTTTCCAAGAGGCCAATGACAGTGAAACCCTCACCATGATTATGGACTGTAAATACACTGTACCAACCCATGTCTCCAATGCCTGCAAAGATCTGATAAACCGGATGCTGCAGAGAGACCCAAAACGCCGAGCCTCACTGGAGGAGATCGAGAGTCACCCCTGGCTGCAAGGCGTGGACCCTTCCCCAGCTACAAAGTTCAGCACACCCCTCGTGTCCCACAAGAACCTGTCTGAGGAAGAACACAACAGCATCATCCAGCGCATGGTGCTGGGAGACATCGCAGACCGGGAAACCATCATAGAAGCCCTGGAGACTAACAAGTACAACCACATCACGGCTACCTACTTTCTGCTGGCAGAGAGGATCCTACGGGAAAAGCAGGAGAAGGAGGTGCAGCCACGGTCCTCCAGCCCGAGCAACATCAAGGCCCATTTCAGGCAATCCTGGCCAACTAAAATCGACATGCACCAGGACATCGAGGACAGTCTGGCGGCTTCGTCCATCTCTCACGCAGGGGGGCCGCAGTCCCCTGCCCGAAGCGCCGAGAACCTGCTGAATGGCCATCGCAGCAAGGGGCTTCTGGATCTGGGCCGGCGGGAGGAGAGCAGCGAGGCTTGTGGAGTCTCCGTGCCAGTCAGCCTCCCGACCTCCGTTCCTCCAAACCCCCTGAAGCCCAGCAGTGTGGCCTCGTCAGCATCGGGCTCTGCCAAACAGCGCACTTGCCTCTTTCGGgtagaggaggatgaagaggaagaggaggagcaggagccATCCCCACTTCCCACCCAAGTGATCCTGCGCCGTAAGCCACCGTCCATCACCAACCGGCTGATGTCGCGCAAGAGCGCCCCGGTGCTTAATCAGATCTTCGAGGAGGAAGGCGAGTCGGACGACGACTTCGACATGGACGAGAGCCTTCCACCCAAGCTCAGCCGCCTGAAAATGAACATGGCGTCACCAGGTACGGCACAGAAGCGATACCACCGGCGTAAGAGCCAGGGTCGTGGCTctagctgctccagctcagaaACCAGCGATGATGACTCTGAGAGCCACCGCCGACGTCTGGACAAAGAATCCGGTTTCACGTACAGCTGGAACCGAAGGGACAGTAGTGAGGGTCCTCCAGGAAACTCTGGAGGGAATGGAGGGGGTAGTAGTGGGGGGCAAAGCAAACCTCCAGGGGAGGGCAACTCAGGACCAGACAGAGGCAGCCCCCCTGGAGGTGGCGGCAGCAGCAACAGTGGTGGGAATAGTGGGAGCacaggaggtggaggagggggTTCAAAAGGACAGGGAAGCccctccagctgctccagtgcCAGCAACAACCCCACATCTGGCTCTACACGCAGCGCAGCCAGGAGTGCGGGAGAGCTGGTGGAGAGCCTAAAGCTCATGAGCCTGTGTTTAAGCTCACAGTTTCGCAGCTCGAGagcaggaggtggaggaggacgATTTATCATCGACCCGCAGAGTCTCTCCAGCGTCAAAGTGCAAGAGAAGTCCTCTTGGAAGATGTGCATCGGATCCAACAGCAGCCTGGACAAGGTGGCCGTGCCGGGCCACGCTAGAAATATCAGTGGCGGGTCGGTGGAGCGTTACCCGGACCAAACGTCAGTCATGCTGAACGGACTAGGCCTAGCCAAGGAGAACAACCTGAACTTGAAAAACAACGTGCTCCAGCTACCTCTGTGTGAAAAAACCATCTCTGTAAACATCCAGAGGAGCCCCAGGGACGGGCTGCTTTGTACATCTGCCCAGGCCAGCTGCTGCCAGGTCATATGATGGCGGGTCGCATGACTGGTCCTCGTAGCAGATTGATCCTATCGCCATATTTGTAGCATAATGAGAACTTGAGTACACTTCTAGTAGCTGTGTTATTACCTTTCTTGACCCTCAGCAGACCTTTGAACCTGCCACCTGCCTTCTATGTtgtcttaatcattcttacaaCGTatttattgagttcctttctccTGTTTTTGACCTTTTTGGGTTTTATGAGGTTTATGCTGCTagcctttttccttttttttcttctttttttttcttttttgaggcGGAGGGTTTTTAGTCCCCGCTTTTTACATTTCTCGACTTCCTGCTGATTCTTCCCCTACCCCGTCGATTTCTTTCCTTTTGCCTTTTAATCTCCTGAAATAAGTGCTTGAGATGGAATAAATGGTTGGGCATTGGCCAGTCAAACAGTGTAGATTtcaatgaaatatttaataaagatataaataaatatgacaaaGGATTATGGAGTAGGAGACACTAGTTAATGTGAGCACTTAGATCCCCccaataaatgtaaatttaaaaatgacGTCCCAGATTAAATTCCAGTTGAAAGAACAAAGCATTCTTCATGCCTGATGTCTTAAACTATATGACCAGTTTACAATTGAGCAATATGCTCATATGGAAAACAAATGATGTaatgattaaattattatacattGAATGTATAATGGTGGTTTCAGACTTTTAAACGTCTTTCAGTTTAGcaggattatttttttagaatatcacaaatttataaatattttgttcttttttatttttatgttttaattggatatgttccaaaaaaactaaactgaaaatcaCTGACAATCAGTCAGGAAATTGAGTTGTTTTGTGTAAAAACTAGAAGAGTATCCATGTAACTAGGATTTTGTCCTAATTCTACTGACACATTCTTGTCCTGTGGTTCAGATGAATAAGCTTTAGTTTCCAAACATTAGTCTTAAAGTTTTGCATATAGTGTAAAGTGACACAAGACTGTCAGGTGTGATACTGGATTTGTAATTGCACTCTGTGAAATGCCACctgaatatatttattgtaaaaaatacatCCAAAGA

Function

symbol description
snrka Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human SNRK (SNF related kinase).
snrk Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation. Predicted to be located in nucleus.

NR:

description
PREDICTED: SNF-related serine/threonine-protein kinase

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08802 SNRK; SNF related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250417.3 True 3862 mRNA 0.50 6 16201385 16247746

Neighbor

gene id symbol gene type direction distance location
fam198a NA coding upstream 42701 16122851 ~ 16158684 (+)
entpd3 entpd3 coding upstream 79694 16104783 ~ 16121691 (+)
palmd palmd coding upstream 126983 16029170 ~ 16074402 (+)
plppr4 plppr4 coding upstream 204574 15970925 ~ 15996811 (+)
LOC103027205 NA coding upstream 331318 15846816 ~ 15870067 (+)
abhd5 abhd5,LOC107657580 coding downstream 46723 16294469 ~ 16304305 (+)
tcaim tcaim,LOC107751885,LOC107704100,LOC107601675 coding downstream 125966 16373712 ~ 16382389 (+)
LOC103035015 cck coding downstream 187594 16435340 ~ 16481411 (+)
ulk4 ulk4,LOC107668185,LOC107564876 coding downstream 311130 16558876 ~ 16680559 (+)
cmtm8 NA coding downstream 497826 16745572 ~ 16748700 (+)
G91280 NA non-coding upstream 3248 16197806 ~ 16198137 (+)
G91147 NA non-coding upstream 101410 16094413 ~ 16099975 (+)
G91141 NA non-coding upstream 201003 15999970 ~ 16000382 (+)
G91139 NA non-coding upstream 234378 15966550 ~ 15967007 (+)
G91137 NA non-coding upstream 239592 15961131 ~ 15961793 (+)
LOC107197645 NA non-coding downstream 94800 16342546 ~ 16369087 (+)
G91309 NA non-coding downstream 115726 16363472 ~ 16363682 (+)
G91306 NA non-coding downstream 121403 16369149 ~ 16369439 (+)
G91312 NA non-coding downstream 134838 16382584 ~ 16383203 (+)
G91339 cnot10 non-coding downstream 185121 16432867 ~ 16435280 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 918330 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 984877 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 1428018 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 1549103 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 1926687 14271995 ~ 14274698 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 147468 16395214 ~ 16419380 (+)
rcc1 NA other downstream 1111093 17358839 ~ 17447933 (+)
G91678 NA other downstream 1664155 17911901 ~ 17912443 (+)
G91728 NA other downstream 2100281 18348027 ~ 18361095 (+)
G91748 NA other downstream 2152742 18400488 ~ 18421263 (+)

Expression


Co-expression Network