LOC103027205


Basic Information

Item Value
gene id LOC103027205
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15846816 ~ 15870067 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250400.3
GCGTGTATAAGCTTACAAAGCTATAAAGAAATCCCTcctttgtgttttctgttgacGGGTAGAACCTGCTTTGCGTGCTTCTCGCTGATCATGGTGACCTCATGCATGTAGTGAACTGTTACCAAGTTCCCTCAGAATGTTGTACGTCTCAGTGGTGATGTGTCACTGAGTGTGATATCAGTGTGTGAACGTGACTCACTGCTTATCTGCAGCAAATCTTCAAAGCATTTAAAAGACTCATCTGGGGACTATGGTGGGATATGGTTTCTGCTGAAaataaacccaagaagaaaggaaaagatgaaaagaaaaaCCTCTGCAGTGCCTGGGAGGGTTTCGAGGCAGACAACAGAACAAATGatgATAATGTGCTTTATGGATGCTGGAAGGCTAAACAGCAGATTAAGCACAAATGCAGATATCTGGATGAGAAGAACGTCGTGGTGGCGGATCATTTACGAAGGTGTCCCTGGTCCTCTGGCTCAGAGCGGAGTGATGTGGCAGAAAAAATACCCCCGGGATTGGACGCATCTCAAGATAATACTCTCTCCACTACATCTCCTGTGGTCCTTCCGGCAGATCCGAGCCCTTTGAGACAAAGCCCTTCTGACACTGACTGTTTCCCAGCAAATAACAATGCACTCGTTAACCCGATGATCCATAAACAAAGTATCATTTATGGTCTCAGCCCGATGGGAACAAGCAGCTTAGAAGTGAAGAAGCATAGCCTGCCCTTGATACGATGGGCTCCTGCTGCATCTCGGGTGCTGATGCTGGAGGAGCCCGTGGCCTGGCGATGTAAAGGATTGGCTACAGTGAACCGTGAAGCAAGGCCTGCTGAACCttcacagctctggaaaagggCATCTGGCAAGAAGCTGGAATGGGGCCATGGGCGGCCGGCCAGGCTGGCACATCTGCAGGTGCAGTCACCCAAAAACGGCCCGTCTGTGGCCAGAAAAAGGCCCGTGATCCAGAGAGAGGCCAGGCTAACTGCGGGTCACGGAGGGGTACAGGTGCAGGACAGTCATGTGGAACAGAACTTCAGTCAAAAAGCAGCAGAGACTAAACATAGAGACCTGCCACACGACAGCGATGGGTCAGCCTCAGGAGTACCAACGAACAAACAAGCACTTTATAACTCTTTGGATCTTTGGAGCCCAACACAAGCAGAGGCAGGACTCAGCTCAGCACAACTGGTACAACAAGGAGGCATCTCCACGGCCTGCTCCGATGTGAGTCAGTGGATGGTAAGGGATGTGCTGTGTCAGTCTGGATACCAAGGAAACAGCAAGTCCTCCACCGGATTCCGGGACGTCACCTTATTCCACGTTCTCCAAATTCTACAGAGCAAACCAGTCCATTTCCCACAAGTCGGGGGTCAGAGACGTCTCGAGGTTCTTTAGTGTCTGAAGCTCTGAAATTCCGTCGCTCAGGAATGAGCTCTGTACTCAGATCAGGTCATAAAGATGAAGCCGCTCTGACAAACGTAAAAAGCGAGCAAGGTCagaatatgattttttattcAAAGCCTTTAAATTTCATTTCCTCTACAGTGTAAAAGGTCATAATCTGATGAAAGTCTTCAGAGGACGCAGTGAGCTGGAATCATGTCAAACAAACAGGACCAACCTACAACATCCATACAGGAACCAACGTCTACACGGGTGGTAATGTTACAGGTGAACAACATAGATAGAAatcagc
>XM_007250401.3
GCGTGTATAAGCTTACAAAGCTATAAAGAAATCCCTcctttgtgttttctgttgacGGGTAGAACCTGCTTTGCGTGCTTCTCGCTGATCATGGTGACCTCATGCATGTAGTGAACTGTTACCAAGTTCCCTCAGAATGTTGTACGTCTCAGTGGTGATGTGTCACTGAGTGTGATATCAGTGTGTGAACGTGACTCACTGCTTATCTGCAGCAAATCTTCAAAGCATTTAAAAGACTCATCTGGGGACTATGGTGGGATATGGTTTCTGCTGAAaataaacccaagaagaaaggaaaagatgaaaagaaaaaCCTCTGCAGTGCCTGGGAGGGTTTCGAGGCAGACAACAGAACAAATGatgATAATGTGCTTTATGGATGCTGGAAGGCTAAACAGCAGATTAAGCACAAATGCAGATATCTGGATGAGAAGAACGTCGTGGTGGCGGATCATTTACGAAGGTGTCCCTGGTCCTCTGGCTCAGAGCGGAGTGATGTGGCAGAAAAAATACCCCCGGGATTGGACGCATCTCAAGATAATACTCTCTCCACTACATCTCCTGTGGTCCTTCCGGCAGATCCGAGCCCTTTGAGACAAAGCCCTTCTGACACTGACTGTTTCCCAGCAAATAACAATGCACTCGTTAACCCGATGATCCATAAACAAAGTATCATTTATGGTCTCAGCCCGATGGGAACAAGCAGCTTAGAAGTGAAGAAGCATAGCCTGCCCTTGATACGATGGGCTCCTGCTGCATCTCGGGTGCTGATGCTGGAGGAGCCCGTGGCCTGGCGATGTAAAGGATTGGCTACAGTGAACCGTGAAGCAAGGCCTGCTGAACCttcacagctctggaaaagggCATCTGGCAAGAAGCTGGAATGGGGCCATGGGCGGCCGGCCAGGCTGGCACATCTGCAGGTGCAGTCACCCAAAAACGGCCCGTCTGTGGCCAGAAAAAGGCCCGTGATCCAGAGAGAGGCCAGGCTAACTGCGGGTCACGGAGGGGTACAGGTGCAGGACAGTCATGTGGAACAGAACTTCAGTCAAAAAGCAGCAGAGACTAAACATAGAGACCTGCCACACGACAGCGATGGGTCAGCCTCAGGAGTACCAACGAACAAACAAGCACTTTATAACTCTTTGGATCTTTGGAGCCCAACACAAGCAGAGGCAGGACTCAGCTCAGCACAACTGGTACAACAAGGAGGCATCTCCACGGCCTGCTCCGATGTGAGTCAGTGGATGGATGTGCTGTGTCAGTCTGGATACCAAGGAAACAGCAAGTCCTCCACCGGATTCCGGGACGTCACCTTATTCCACGTTCTCCAAATTCTACAGAGCAAACCAGTCCATTTCCCACAAGTCGGGGGTCAGAGACGTCTCGAGGTTCTTTAGTGTCTGAAGCTCTGAAATTCCGTCGCTCAGGAATGAGCTCTGTACTCAGATCAGGTCATAAAGATGAAGCCGCTCTGACAAACGTAAAAAGCGAGCAAGGTCagaatatgattttttattcAAAGCCTTTAAATTTCATTTCCTCTACAGTGTAAAAGGTCATAATCTGATGAAAGTCTTCAGAGGACGCAGTGAGCTGGAATCATGTCAAACAAACAGGACCAACCTACAACATCCATACAGGAACCAACGTCTACACGGGTGGTAATGTTACAGGTGAACAACATAGATAGAAatcagc
>XM_007250402.3
GCGTGTATAAGCTTACAAAGCTATAAAGAAATCCCTcctttgtgttttctgttgacGGGTAGAACCTGCTTTGCGTGCTTCTCGCTGATCATGGTGACCTCATGCATGTAGTGAACTGTTACCAAGTTCCCTCAGAATGTTGTACGTCTCAGTGGTGATGTGTCACTGAGTGTGATATCAGTGTGTGAACGTGACTCACTGCTTATCTGCAGCAAATCTTCAAAGCATTTAAAAGACTCATCTGGGGACTATGGTGGGATATGGTTTCTGCTGAAaataaacccaagaagaaaggaaaagatgaaaagaaaaaCCTCTGCAGTGCCTGGGAGGGTTTCGAGGCAGACAACAGAACAAATGatgATAATGTGCTTTATGGATGCTGGAAGGCTAAACAGCAGATTAAGCACAAATGCAGATATCTGGATGAGAAGAACGTCGTGGTGGCGGATCATTTACGAAGGTGTCCCTGGTCCTCTGGCTCAGAGCGGAGTGATGTGGCAGAAAAAATACCCCCGGGATTGGACGCATCTCAAGATAATACTCTCTCCACTACATCTCCTGTGGTCCTTCCGGCAGATCCGAGCCCTTTGAGACAAAGCCCTTCTGACACTGACTGTTTCCCAGCAAATAACAATGCACTCGTTAACCCGATGATCCATAAACAAAGTATCATTTATGGTCTCAGCCCGATGGGAACAAGCAGCTTAGAAGTGAAGAAGCATAGCCTGCCCTTGATACGATGGGCTCCTGCTGCATCTCGGGTGCTGATGCTGGAGGAGCCCGTGGCCTGGCGATGTAAAGGATTGGCTACAGTGAACCGTGAAGCAAGGCCTGCTGAACCttcacagctctggaaaagggCATCTGGCAAGAAGCTGGAATGGGGCCATGGGCGGCCGGCCAGGCTGGCACATCTGCAGGTGCAGTCACCCAAAAACGGCCCGTCTGTGGCCAGAAAAAGGCCCGTGATCCAGAGAGAGGCCAGGCTAACTGCGGGTCACGGAGGGGTACAGGTGCAGGACAGTCATGTGGAACAGAACTTCAGTCAAAAAGCAGCAGAGACTAAACATAGAGACCTGCCACACGACAGCGATGGGTCAGCCTCAGGAGTACCAACGAACAAACAAGCACTTTATAACTCTTTGGATCTTTGGAGCCCAACACAAGCAGAGGCAGGACTCAGCTCAGCACAACTGGTACAACAAGGAGGCATCTCCACGGCCTGCTCCGATGATGTGCTGTGTCAGTCTGGATACCAAGGAAACAGCAAGTCCTCCACCGGATTCCGGGACGTCACCTTATTCCACGTTCTCCAAATTCTACAGAGCAAACCAGTCCATTTCCCACAAGTCGGGGGTCAGAGACGTCTCGAGGTTCTTTAGTGTCTGAAGCTCTGAAATTCCGTCGCTCAGGAATGAGCTCTGTACTCAGATCAGGTCATAAAGATGAAGCCGCTCTGACAAACGTAAAAAGCGAGCAAGGTCagaatatgattttttattcAAAGCCTTTAAATTTCATTTCCTCTACAGTGTAAAAGGTCATAATCTGATGAAAGTCTTCAGAGGACGCAGTGAGCTGGAATCATGTCAAACAAACAGGACCAACCTACAACATCCATACAGGAACCAACGTCTACACGGGTGGTAATGTTACAGGTGAACAACATAGATAGAAatcagc

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250400.3 True 1707 mRNA 0.49 4 15846816 15870067
XM_007250401.3 False 1701 mRNA 0.49 4 15846816 15870067
XM_007250402.3 False 1686 mRNA 0.49 4 15846816 15870067

Neighbor

gene id symbol gene type direction distance location
snx7 snx7 coding upstream 5933 15813311 ~ 15840883 (+)
LOC103025597 ptbp2,LOC108268572,LOC107739015,LOC107657762,LOC107677274,LOC107712817 coding upstream 364013 15468293 ~ 15482803 (+)
LOC103024964 tmem56a,LOC103024964,LOC108428968,LOC107712816,LOC107677262,LOC107657764,LOC107560653 coding upstream 571920 15248801 ~ 15274896 (+)
cnn3 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107739018,LOC107657766 coding upstream 612001 15222823 ~ 15234815 (+)
LOC103022978 LOC108428965 coding upstream 691798 15145358 ~ 15155018 (+)
plppr4 plppr4 coding downstream 100858 15970925 ~ 15996811 (+)
palmd palmd coding downstream 159103 16029170 ~ 16074402 (+)
entpd3 entpd3 coding downstream 234716 16104783 ~ 16121691 (+)
fam198a NA coding downstream 252784 16122851 ~ 16158684 (+)
snrk snrk,snrka,LOC107551216,LOC107723077,LOC107657578,LOC107704097,LOC107751880 coding downstream 331318 16201385 ~ 16247746 (+)
G91110 NA non-coding upstream 53993 15705723 ~ 15792823 (+)
G91088 NA non-coding upstream 480847 15365185 ~ 15365969 (+)
G91086 NA non-coding upstream 510763 15335818 ~ 15336053 (+)
G91085 NA non-coding upstream 515596 15330595 ~ 15331220 (+)
G91084 NA non-coding upstream 516660 15329443 ~ 15330156 (+)
G91137 NA non-coding downstream 91064 15961131 ~ 15961793 (+)
G91139 NA non-coding downstream 96483 15966550 ~ 15967007 (+)
G91141 NA non-coding downstream 129903 15999970 ~ 16000382 (+)
G91147 NA non-coding downstream 224346 16094413 ~ 16099975 (+)
G91280 NA non-coding downstream 327739 16197806 ~ 16198137 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 563761 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 630308 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 1073449 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 1194534 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 1572118 14271995 ~ 14274698 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 525147 16395214 ~ 16419380 (+)
rcc1 NA other downstream 1488772 17358839 ~ 17447933 (+)
G91678 NA other downstream 2041834 17911901 ~ 17912443 (+)
G91728 NA other downstream 2477960 18348027 ~ 18361095 (+)
G91748 NA other downstream 2530421 18400488 ~ 18421263 (+)

Expression


Co-expression Network