LOC103025597 (ptbp2,LOC108268572,LOC107739015,LOC107657762,LOC107677274,LOC107712817)


Basic Information

Item Value
gene id LOC103025597
gene name ptbp2,LOC108268572,LOC107739015,LOC107657762,LOC107677274,LOC107712817
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15468293 ~ 15482803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250394.3
tccctctcccccTGGACCGGGTGCTGTGACTCTGTTTCCGCGCTTTTTCGAGTTCAGCTTCCGCCTCCATTTTGTCCTGTTGTGCGCAGTTGGCAGAGCGGAAGAATTACGGCTGCTGTGCTCCGGGTCTGGGAGAAGCATTTACAGTAATGGACGGCATTAGTGACGTTGCGGTTGGTGTAAAGAGAGGATCAGATGAGCTGTTGTCCAGCAGCATGTACAACAGTCCCAACTCAGGGATGAGCAGCATCAGTGATGGCACATCCAATGGAAGTGACAGCAAAAAGTTAAGAGTTGAAGACAGGGTAGGAGACGCCCCTCCATCTCGCGTTCTCCACATCAGAAAACTACCTAATGAAGTCTCGGAGACAGAGGTCATTGCTTTAGGGCTGCCTTTTGGGAAGGTCACAAACATCCTTACTCTAAAAGGCAAAAATCAGGCGTTCCTAGAGCTAAGCACAGAGGAAGCCGCCATTACCATGGTGAACTACTATTCAGCTGTTACACCACATGTCCGAAACGTCCCCGTCTTCATACAGTATTCCAATCACAAAGAGCTAAAGACAGACAATGCAAATCAGTCAACGCCATCATCAGGCTCAAGTGACGGTACGCTTACATCACCCTCCAGTCCCGTATTAAGAATCATCATTGACAACATGTTCTACCCTGTCACTTTGGATGTGTTGCAGCAGATCTTCTCAAAATTTGGCACAGTCATGAAAATCATCACATTTACAAAGAACAATCAGTTTCAGGCTTTGCTACAGTACAATGATGCAGGAAGTGCTCAACAAGCCAAAGTGGCTCTCGATGGTCAGAACATTTACAATGCCTGCTGTACACTCCGCATAGACTATTCCAAACTCGTCAACCTGAATGTGAAGTACAACAACGATAAGAGTAGGGACTACACCAGACCCGAGCTGCCTGCTGGCGATGGCCAGCCTGCTGTGGACCCCTCTATGGCAGCAGCCTTTAGCAAGGACTCGAACTCCCTGCTCGGTGCGCTGAGCCCTCTGAGTGCGGCGgctgcagcagcggcagcagcagggAGAGTGGCTCTGTCTGGACATTCAGGCAACAGTGGAGTGCTCTTGGTCAGCAATCTTAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGGGTGTATGGCGACGTGCAGCGCGTGAAGATTCtctataacaaaaaagacagtGCGCTGATACAGATGGCTGATCTGAATCAAGCCCAGCTTGCAATGAGTCATCTCAATGGACAGAAGATGTATTCAAAGATCATCCGCGTTACCATGTCCAAGCATCAGACGGTTCAGTTACCCAGAGACGGTCTGGATGATCAGGGCCTCACCAAGGATTTCACCAACTCTCCTCTGCATCGTTTCAAAAAGCCCGGCTCGAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACCCTCCATCTGTCAAACATCCCACAAGACATAACTGAAGATGACCTCAGAGTACTGTTCACTAACTCTGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGATCCAGCTGTCTACAGTTGAAGAAGCCATTCAGTGCTTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACTTGAGGGTCTCCTTCTCCAAGTCAACAATTTAAAAGAAGCTTAGATATCTTGCTTTGTCTTACGTTTTGACTGTTCCGGTACACTGGGGACCACagtctctttttttgttgttgttcttttgtttgtttgtttgtttttgtaccaGTCATTCCCTAAGAAAATATGGGTGAACCTTACATTTTCTTTGAAATGAAAAATTCTTATAGTTTCCCAGTGTCCCCATTGTATGCTAGCAGGTTGTGAACCTTTCCCCAGTTCTTTGCTAGAGGAGGGTGGAACctcattttatta
>XM_015606115.2
ctccctctcccccTGGACCGGGTGCTGTGACTCTGTTTCCGCGCTTTTTCGAGTTCAGCTTCCGCCTCCATTTTGTCCTGTTGTGCGCAGTTGGCAGAGCGGAAGAATTACGGCTGCTGTGCTCCGGGTCTGGGAGAAGCATTTACAGTAATGGACGGCATTAGTGACGTTGCGGTTGGTGTAAAGAGAGGATCAGATGAGCTGTTGTCCAGCAGCATGTACAACAGTCCCAACTCAGGGATGAGCAGCATCAGTGATGGCACATCCAATGGAAGTGACAGCAAAAAGTTAAGAGTTGAAGACAGGGTAGGAGACGCCCCTCCATCTCGCGTTCTCCACATCAGAAAACTACCTAATGAAGTCTCGGAGACAGAGGTCATTGCTTTAGGGCTGCCTTTTGGGAAGGTCACAAACATCCTTACTCTAAAAGGCAAAAATCAGGCGTTCCTAGAGCTAAGCACAGAGGAAGCCGCCATTACCATGGTGAACTACTATTCAGCTGTTACACCACATGTCCGAAACGTCCCCGTCTTCATACAGTATTCCAATCACAAAGAGCTAAAGACAGACAATGCAAATCAGTCAACGCCATCATCAGGCTCAAGTGACGGTACGCTTACATCACCCTCCAGTCCCGTATTAAGAATCATCATTGACAACATGTTCTACCCTGTCACTTTGGATGTGTTGCAGCAGATCTTCTCAAAATTTGGCACAGTCATGAAAATCATCACATTTACAAAGAACAATCAGTTTCAGGCTTTGCTACAGTACAATGATGCAGGAAGTGCTCAACAAGCCAAAGTGGCTCTCGATGGTCAGAACATTTACAATGCCTGCTGTACACTCCGCATAGACTATTCCAAACTCGTCAACCTGAATGTGAAGTACAACAACGATAAGAGTAGGGACTACACCAGACCCGAGCTGCCTGCTGGCGATGGCCAGCCTGCTGTGGACCCCTCTATGGCAGCAGCCTTTAGCAAGGACTCGAACTCCCTGCTCGGTAAGATCCCAGGTGCGCTGAGCCCTCTGAGTGCGGCGgctgcagcagcggcagcagcagggAGAGTGGCTCTGTCTGGACATTCAGGCAACAGTGGAGTGCTCTTGGTCAGCAATCTTAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGGGTGTATGGCGACGTGCAGCGCGTGAAGATTCtctataacaaaaaagacagtGCGCTGATACAGATGGCTGATCTGAATCAAGCCCAGCTTGCAATGAGTCATCTCAATGGACAGAAGATGTATTCAAAGATCATCCGCGTTACCATGTCCAAGCATCAGACGGTTCAGTTACCCAGAGACGGTCTGGATGATCAGGGCCTCACCAAGGATTTCACCAACTCTCCTCTGCATCGTTTCAAAAAGCCCGGCTCGAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACCCTCCATCTGTCAAACATCCCACAAGACATAACTGAAGATGACCTCAGAGTACTGTTCACTAACTCTGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGATCCAGCTGTCTACAGTTGAAGAAGCCATTCAGTGCTTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACTTGAGGGTCTCCTTCTCCAAGTCAACAATTTAAAAGAAGCTTAGATATCTTGCTTTGTCTTACGTTTTGACTGTTCCGGTACACTGGGGACCACagtctctttttttgttgttgttcttttgtttgtttgtttgtttttgtaccaGTCATTCCCTAAGAAAATATGGGTGAACCTTACATTTTCTTTGAAATGAAAAATTCTTATAGTTTCCCAGTGTCCCCATTGTATGCTAGCAGGTTGTGAACCTTTCCCCAGTTCTTTGCTAGAGGAGGGTGGAACctcattttattataattagttgaCAAAGAATGTGCCTTACTCAACGAGCTAGCATAAAGATTTCCACTTCCCTACGTTTTCATAAACCCAAGTGGGCCACAGGAGGACAGGCTTCTTTGTTGTAGAGGTGtaaagttttgtaaaaaaaaaaaacagctattttgttttcttctccCATGTGTGATTTGTACAGTGTGTGAATTCTTGCCTCTTAGAATTCAAGTTCATGTTATCTTGCTTTTTGTGCTCATGTCTCATTTTGTGTTTCTACATATTTGATGAGTTAGAATTCTTGGTAGGATCTCGGTGAAATATCCGGTGGAATGTATATAACACACCTTTAACATTGATTCTTTATAGAGCTTAATGTTCACCATAAAGCTTTAATATTAGTGTGGGTCCACCAAGTGTTTTTATTAAGCGTTTCTTTTATAATGTACCATTAAAACATCAGTGGTTAGAACTTCAGTACATGTTGAATTTGAGTTTTGCATAGTAGACATttatctttgatttttttttgttgttgttgttgtttaaacTCCTCAAAGGCTGTTTTGCATGTGCTAACAGGTGTAGTTAGTTGTGAGAATCTTTGTCTGGAGAACAGCCGTTGCATGCATTAGTGAAAGGTTAAAATTGCGAGCCTTACGATTTGAAATGAGCAGCGCGTAGGAGAGAGCAACCTGGTGGGACCAAAGTTTGTGCCTTTAGTCTTAATTTACTGAACacaaatttttaatcaaatccCTCATTTTGTATTTCTGAGAAGTTAGGCCCACAGGCAGGCCGATGTTTATCCAGTATGAAAAAATGTAACGGTTACAGAACATCtagcccagttttttttttcttttcttttcttaaaacCCTATGGgtgtatttttcacattaagTGACTGTACATGTTGACAGTGGAAATAAGTTccctatttcattttttttttttttttttttacttatttagaaTTGTAAAATTCAATATAGTTTGAATGTGGCCCAATTAAAAGATCTTTTTTCTAA
>XM_022673642.1
TCAGCAGGGCTCTGCTCGTCTCTCCCCGTGTGCTGAGACTCGGCGCTCCGCtgctctctcctccctctcccccTGGACCGGGTGCTGTGACTCTGTTTCCGCGCTTTTTCGAGTTCAGCTTCCGCCTCCATTTTGTCCTGTTGTGCGCAGTTGGCAGAGCGGAAGAATTACGGCTGCTGTGCTCCGGGTCTGGGAGAAGCATTTACAGTAATGGACGGAGAGGATCAGATGAGCTGTTGTCCAGCAGCATGTACAACAGTCCCAACTCAGGGATGAGCAGCATCAGTGATGGCACATCCAATGGAAGTGACAGCAAAAAGTTAAGAGTTGAAGACAGGGTAGGAGACGCCCCTCCATCTCGCGTTCTCCACATCAGAAAACTACCTAATGAAGTCTCGGAGACAGAGGTCATTGCTTTAGGGCTGCCTTTTGGGAAGGTCACAAACATCCTTACTCTAAAAGGCAAAAATCAGGCGTTCCTAGAGCTAAGCACAGAGGAAGCCGCCATTACCATGGTGAACTACTATTCAGCTGTTACACCACATGTCCGAAACGTCCCCGTCTTCATACAGTATTCCAATCACAAAGAGCTAAAGACAGACAATGCAAATCAGTCAACGCCATCATCAGGCTCAAGTGACGGTACGCTTACATCACCCTCCAGTCCCGTATTAAGAATCATCATTGACAACATGTTCTACCCTGTCACTTTGGATGTGTTGCAGCAGATCTTCTCAAAATTTGGCACAGTCATGAAAATCATCACATTTACAAAGAACAATCAGTTTCAGGCTTTGCTACAGTACAATGATGCAGGAAGTGCTCAACAAGCCAAAGTGGCTCTCGATGGTCAGAACATTTACAATGCCTGCTGTACACTCCGCATAGACTATTCCAAACTCGTCAACCTGAATGTGAAGTACAACAACGATAAGAGTAGGGACTACACCAGACCCGAGCTGCCTGCTGGCGATGGCCAGCCTGCTGTGGACCCCTCTATGGCAGCAGCCTTTAGCAAGGACTCGAACTCCCTGCTCGGTAAGATCCCAGGTGCGCTGAGCCCTCTGAGTGCGGCGgctgcagcagcggcagcagcagggAGAGTGGCTCTGTCTGGACATTCAGGCAACAGTGGAGTGCTCTTGGTCAGCAATCTTAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGGGTGTATGGCGACGTGCAGCGCGTGAAGATTCtctataacaaaaaagacagtGCGCTGATACAGATGGCTGATCTGAATCAAGCCCAGCTTGCAATGAGTCATCTCAATGGACAGAAGATGTATTCAAAGATCATCCGCGTTACCATGTCCAAGCATCAGACGGTTCAGTTACCCAGAGACGGTCTGGATGATCAGGGCCTCACCAAGGATTTCACCAACTCTCCTCTGCATCGTTTCAAAAAGCCCGGCTCGAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACCCTCCATCTGTCAAACATCCCACAAGACATAACTGAAGATGACCTCAGAGTACTGTTCACTAACTCTGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCAAGATCGCAAAATGGCTCTGATCCAGCTGTCTACAGTTGAAGAAGCCATTCAGTGCTTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACTTGAGGGTCTCCTTCTCCAAGTCAACAATTTAAAAGAAGCTTAGATATCTTGCTTTGTCTTACGTTTTGACTGTTCCGGTACACTGGGGACCACagtctctttttttgttgttgttcttttgtttgtttgtttgtttttgtaccaGTCATTCCCTAAGAAAATATGGGTGAACCTTACATTTTCTTTGAAATGAAAAATTCTTATAGTTTCCCAGTGTCCCCATTGTATGCTAGCAGGTTGTGAACCTTTCCCCAGTTCTTTGCTAGAGGAGGGTGGAACctcattttatta

Function

symbol description
ptbp2 Enables RNA binding activity. Involved in negative regulation of RNA splicing. Predicted to be integral component of membrane. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus.

NR:

description
polypyrimidine tract-binding protein 2 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250394.3 False 1932 mRNA 0.48 14 15468354 15481792
XM_015606115.2 True 2956 mRNA 0.43 14 15468353 15482803
XM_022673642.1 False 1977 mRNA 0.48 13 15468293 15481792

Neighbor

gene id symbol gene type direction distance location
LOC103024964 tmem56a,LOC103024964,LOC108428968,LOC107712816,LOC107677262,LOC107657764,LOC107560653 coding upstream 193397 15248801 ~ 15274896 (+)
cnn3 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107739018,LOC107657766 coding upstream 233478 15222823 ~ 15234815 (+)
LOC103022978 LOC108428965 coding upstream 313275 15145358 ~ 15155018 (+)
abcd3 abcd3,LOC107677270,LOC107712812 coding upstream 323988 15130223 ~ 15144305 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding upstream 373330 15076348 ~ 15094963 (+)
snx7 snx7 coding downstream 330508 15813311 ~ 15840883 (+)
LOC103027205 NA coding downstream 364013 15846816 ~ 15870067 (+)
plppr4 plppr4 coding downstream 488122 15970925 ~ 15996811 (+)
palmd palmd coding downstream 546367 16029170 ~ 16074402 (+)
entpd3 entpd3 coding downstream 621980 16104783 ~ 16121691 (+)
G91088 NA non-coding upstream 102324 15365185 ~ 15365969 (+)
G91086 NA non-coding upstream 132240 15335818 ~ 15336053 (+)
G91085 NA non-coding upstream 137073 15330595 ~ 15331220 (+)
G91084 NA non-coding upstream 138137 15329443 ~ 15330156 (+)
G91083 NA non-coding upstream 138894 15329108 ~ 15329399 (+)
G91110 NA non-coding downstream 222920 15705723 ~ 15792823 (+)
G91137 NA non-coding downstream 478328 15961131 ~ 15961793 (+)
G91139 NA non-coding downstream 483747 15966550 ~ 15967007 (+)
G91141 NA non-coding downstream 517167 15999970 ~ 16000382 (+)
G91147 NA non-coding downstream 611610 16094413 ~ 16099975 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 185238 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 251785 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 694926 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 816011 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 1193595 14271995 ~ 14274698 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 912411 16395214 ~ 16419380 (+)
rcc1 NA other downstream 1876036 17358839 ~ 17447933 (+)
G91678 NA other downstream 2429098 17911901 ~ 17912443 (+)
G91728 NA other downstream 2865224 18348027 ~ 18361095 (+)
G91748 NA other downstream 2917685 18400488 ~ 18421263 (+)

Expression


Co-expression Network