eif1b (eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100)


Basic Information

Item Value
gene id eif1b
gene name eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14271995 ~ 14274698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122125
CCGCTGCAGGAGGCTTTAGCTGTGTAAGCGTCGCGTTCTGTTCTTTTCCGGCCGCCGCTCTGCGCTGTGAGCTGCTGTGAGGTTGCGTCAGCCTTTCTGTGAGGCCTTTTCTCTTTCCGCCTTTGTTGCTGCCAGAGCTCTCGGGCTTCACTAAAGTCGAAGACAGACGGCACCGCGCGCCGCTAGATTTCATCCATCAACGGTATCGCCCTAATATCGCATGTCCTCTATCCAGAACCTCCAGTCTTTCGATCCCTTTGCTGATGCAACTAAGGGTGACAACTTGCTCCCGGCCGGGACAGAGGATAAAATCCACATAAGGATTCAGCAACGAAACGGGCGCAAGACGCTTACAACAGTGCAAGGAATTGCAGATGATTACGACAAGAAAAAGCTTGTGAAGGCCTTCAAGAAGaaatttGCATGCAATGGTACTGTGATCGAGCACCCTGAGTACGGGGAGGTTATCCAGCTGCAGGGAGACCAAAGGAAAAACATTTGTCAGTTTCTTCTTGagATAAACATTGTAAAAGAGGAACAGTTGAAGGTCCACGGCTTTTAAAATGATGGACTTGCCAGAGGACCAAGACTACAAAAGTTTTTAGGACACCAGATTTGATTAGGGCTCTAAAGTTTTCTGACTGTGTGATATGGCTGTCGAGATAAATGTTGACtgtataataaagtttttatagGTATTCcaagtttaaatattttgataagTGTATGACTGCTTCCAATCAGGGACTGACTTTGGTGTTGACTGTAACTAACATGAACATGCTCAGCTAAATATTTCTATCCAAGACACAATAAAACCATAtgactttggcagatttttGATAGcagttttctttctgtttaaaCCTCATTTCTTGTAACAGTGCGCCATGCGTGTATGGAAGTAAACACTTAATAAACCAAGGAATGGCTTG
>XM_007249567.3
CGGTGGTGACCTCACGGTGTCCGCAGGGCTGGTAAACCCCGCCTCTGGCCGGGGCTGCAGTGCTTGGGTCCGCTGCAGGAGGCTTTAGCTGTGTAAGCGTCGCGTTCTGTTCTTTTCCGGCCGCCGCTCTGCGCTGTGAGCTGCTGTGAGGTTGCGTCAGCCTTTCTGTGAGGCCTTTTCTCTTTCCGCCTTTGTTGCTGCCAGAGCTCTCGGGCTTCACTAAAGTCGAAGACAGACGGCACCGCGCGCCGCTAGATTTCATCCATCAACGGTATCGCCCTAATATCGCATGTCCTCTATCCAGAACCTCCAGTCTTTCGATCCCTTTGCTGATGCAACTAAGGGTGACAACTTGCTCCCGGCCGGGACAGAGGATAAAATCCACATAAGGATTCAGCAACGAAACGGGCGCAAGACGCTTACAACAGTGCAAGGAATTGCAGATGATTACGACAAGAAAAAGCTTGTGAAGGCCTTCAAGAAGaaatttGCATGCAATGGTACTGTGATCGAGCACCCTGAGTACGGGGAGGTTATCCAGCTGCAGGGAGACCAAAGGAAAAACATTTGTCAGTTTCTTCTTGagATAAACATTGTAAAAGAGGAACAGTTGAAGGTCCACGGCTTTTAAAATGATGGACTTGCCAGAGGACCAAGACTACAAAAGTTTTTAGGACACCAGATTTGATTAGGGCTCTAAAGTTTTCTGACTGTGTGATATGGCTGTCGAGATAAATGTTGACtgtataataaagtttttatagGTATTCcaagtttaaatattttgataagTGTATGACTGCTTCCAATCAGGGACTGACTTTGGTGTTGACTGTAACTAACATGAACATGCTCAGCTAAATATTTCTATCCAAGACACAATAAAACCATAtgactttggcagatttttGATAGcagttttctttctgtttaaaCCTCATTTCTTGTAACAGTGCGCCATGCGTGTATGGAAGTAAACACTTAATAAACCAA

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

NR:

description
PREDICTED: eukaryotic translation initiation factor 1b

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03113 EIF1, SUI1; translation initiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU122125 False 935 TUCP 0.44 4 14272064 14274698
XM_007249567.3 True 993 mRNA 0.46 4 14271995 14274687

Neighbor

gene id symbol gene type direction distance location
LOC103042587 NA coding upstream 1163 14266717 ~ 14270832 (+)
LOC103043509 LOC108428914,LOC108273518,LOC105910609,LOC106023690 coding upstream 15306 14252003 ~ 14256689 (+)
LOC103042889 cblc,LOC103042889,LOC107657700,LOC106577440 coding upstream 24689 14227627 ~ 14247306 (+)
LOC103045349 NA coding upstream 125262 14136719 ~ 14146733 (+)
LOC103045642 yme1l1,LOC108428941,LOC108269264 coding upstream 136019 14120999 ~ 14135976 (+)
ccdc129 ccdc129 coding downstream 41387 14316085 ~ 14330564 (+)
ppp1r17 ppp1r17 coding downstream 56700 14331398 ~ 14333825 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding downstream 248174 14522872 ~ 14533374 (+)
cubn cubn,LOC107677149 coding downstream 258902 14533600 ~ 14588128 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding downstream 316144 14590842 ~ 14639053 (+)
G90719 NA non-coding upstream 49725 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 82570 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 266547 14005234 ~ 14005448 (+)
G90645 grik2,LOC107667969 non-coding upstream 682751 13559581 ~ 13589244 (+)
G90625 NA non-coding upstream 769231 13502292 ~ 13502764 (+)
G90818 NA non-coding downstream 81902 14356600 ~ 14357694 (+)
G90836 NA non-coding downstream 238753 14513451 ~ 14514175 (+)
G90941 NA non-coding downstream 586644 14861342 ~ 14861709 (+)
G90946 NA non-coding downstream 639365 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 691161 14965859 ~ 14968245 (+)
npy npy other upstream 1323745 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 1719223 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 2115133 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 2133133 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 3364823 10903683 ~ 10907172 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 371100 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 387959 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 885517 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 1001444 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 2120516 16395214 ~ 16419380 (+)

Expression


Co-expression Network