G90645 (grik2,LOC107667969)


Basic Information

Item Value
gene id G90645
gene name grik2,LOC107667969
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 13559581 ~ 13589244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121936
CCATAGGAGTTCCAACTCCGTAGGCCTTGGAGTCGATGAGGCCTCCGATCTGTGTGAGGTTGCAGTTGCGTTGGGTGACGAACTCGATTGTGGTGGACTCCATGAGGAAAGCGTAATCCGAGGTGAGCACCCGCTGGATCCCCTCCTCCACACTCTTCACCATGACGGAATGCCTGCGACTGCTCATAAACTCCCACATCTTGTCATAGGTGGAGATCTTTGTTTTCTTTAAAAAAGGTCATGGTGGAGCCGTCCTCCACTACGCCATACTCGATCTTGGTCTGCTTCGCCAGGTCATCGGCTGAATCGATCGGCGATTCCATCCTCTCCACGGTGAGGAAGGCGGCCAGGTTGGCCGTGTAGGAGGAGATGATGATGAGGGTGAAGAACCACCAGATGCCTCCTACTATTCTGGTGGAAAGGGCTTTGGGCATGAGCTCAGACCCTAGCGGAGAGGAGTAGAGAGAGCGGTCAGGGGAGGGCAGTGGTTACGGCGGGAGAGGCCTGGCCTGGTCTGAGCTCACTGCAGAGGAGAGCATAGAGCTGCAGGGCAAGGATGAGGAGGATGCCagtgtaccactttaaaataag

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121936 True 591 lncRNA 0.55 2 13559581 13589244

Neighbor

gene id symbol gene type direction distance location
LOC103024879 pde11al,LOC108441531,LOC107743218,LOC103364058 coding upstream 367315 13167655 ~ 13192266 (+)
mpp6 mpp6,mpp6a,LOC108267518,LOC107749029,LOC107685533,LOC107596657 coding upstream 575802 12950617 ~ 12983779 (+)
stk31 NA coding upstream 614843 12927210 ~ 12944738 (+)
LOC103037789 LOC108436550,LOC108258408,LOC105908885 coding upstream 773401 12762287 ~ 12786180 (+)
ttc24 ttc24 coding upstream 799558 12744236 ~ 12760023 (+)
ascc3 ascc3 coding downstream 229847 13819091 ~ 14034911 (+)
sim1 sim1,sim1a,LOC107697271,LOC107661021,LOC103355653,LOC107551726 coding downstream 447728 14036972 ~ 14056298 (+)
LOC103046158 LOC103046158,LOC108428940,LOC107095448 coding downstream 521281 14110525 ~ 14119663 (+)
LOC103045642 yme1l1,LOC108428941,LOC108269264 coding downstream 531755 14120999 ~ 14135976 (+)
LOC103045349 NA coding downstream 547475 14136719 ~ 14146733 (+)
G90625 NA non-coding upstream 56817 13502292 ~ 13502764 (+)
G90627 NA non-coding upstream 74983 13484138 ~ 13484598 (+)
G90622 NA non-coding upstream 105080 13454169 ~ 13454501 (+)
G90619 NA non-coding upstream 149145 13405683 ~ 13410436 (+)
LOC111193295 NA non-coding upstream 181359 13368203 ~ 13378222 (+)
G90678 NA non-coding downstream 415990 14005234 ~ 14005448 (+)
G90692 NA non-coding downstream 597370 14186614 ~ 14189425 (+)
G90719 NA non-coding downstream 631769 14221013 ~ 14222270 (+)
G90818 NA non-coding downstream 767356 14356600 ~ 14357694 (+)
G90836 NA non-coding downstream 924207 14513451 ~ 14514175 (+)
npy npy other upstream 611331 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 1006809 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 1402719 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 1420719 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 2652409 10903683 ~ 10907172 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 682751 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 1056554 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 1073413 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 1570971 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 1686898 15276142 ~ 15283055 (+)

Expression


Co-expression Network