G90836


Basic Information

Item Value
gene id G90836
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14513451 ~ 14514175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122179
CAAATATTACCTAATGCAAGCAAAAACAGTGCGACCATTTCGTTTAGgaaagatttattgccttagtGAAAGCGGTGACAGTTTGATGTTTTATTGTGTACACAAGTCATCAGTTCATTCTCCTAGACTTTGGTCAATTTTCAATAACAAATACAAACCAGAAAAGTAGTCACTCAGATTATTGCTGTGGTCTTGCTTGTACAGTGTAAACTATGTGGTAAACAGGAATACTGGTAAAGCTGGTTTTCTCACTGGCCTACAGTTTGCAGAAACACAACTCAGTCTGCAGATCTTTCTTTCTATTATCGCAAAAGGCactttaaagctgtttttaattgtttgtttgtttaactctcacggaaacaacagaaaaactcCACATTCTATATGGCATCCGGCTACAGTGCACTCCCCCTCAGTGCTCTATAACTGTCCTGTTCTTTACAGATTCACATGCGGTTCATTCCAGATCATCATGATGCTTAGTGGACTCATTAATTACGTGCCCATCTCTTGTTTCTATAGTCTTAATCACCACCTTCTTTGTAAGGTTTTCGATCATTGGTCTGGAGTCTAGCATGGTTTCTGCGCAAAGAGGAAAGCACAGTCTTGAATGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122179 True 620 lncRNA 0.39 2 14513451 14514175

Neighbor

gene id symbol gene type direction distance location
ppp1r17 ppp1r17 coding upstream 179626 14331398 ~ 14333825 (+)
ccdc129 ccdc129 coding upstream 182887 14316085 ~ 14330564 (+)
LOC103042587 NA coding upstream 242619 14266717 ~ 14270832 (+)
LOC103043509 LOC108428914,LOC108273518,LOC105910609,LOC106023690 coding upstream 256762 14252003 ~ 14256689 (+)
LOC103042889 cblc,LOC103042889,LOC107657700,LOC106577440 coding upstream 266145 14227627 ~ 14247306 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding downstream 8697 14522872 ~ 14533374 (+)
cubn cubn,LOC107677149 coding downstream 19425 14533600 ~ 14588128 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding downstream 76667 14590842 ~ 14639053 (+)
LOC103045139 LOC108428921 coding downstream 212813 14726988 ~ 14733577 (+)
steap2 steap2,LOC107555016,LOC107657773 coding downstream 220717 14734892 ~ 14893717 (+)
G90818 NA non-coding upstream 155757 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 291181 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 324026 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 508003 14005234 ~ 14005448 (+)
G90645 grik2,LOC107667969 non-coding upstream 924207 13559581 ~ 13589244 (+)
G90941 NA non-coding downstream 347167 14861342 ~ 14861709 (+)
G90946 NA non-coding downstream 399888 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 451684 14965859 ~ 14968245 (+)
G90994 NA non-coding downstream 492845 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 504711 15018886 ~ 15019404 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 238753 14271995 ~ 14274698 (+)
npy npy other upstream 1565201 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 1960679 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 2356589 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 2374589 12135279 ~ 12138862 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 131623 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 148482 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 646040 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 761967 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1881039 16395214 ~ 16419380 (+)

Expression


Co-expression Network