LOC103042587


Basic Information

Item Value
gene id LOC103042587
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14266717 ~ 14270832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249568.3
TTCTAGCtttgtaatgaatgtaaatactcTTAAGACATTTTATGGATGATATTCATCTTGAACAgatatacagacacacattttaagcaTACTGTTTTTCCTGTCTCACTGTTGTAAACAAGTAAGTTGTGCATGTGACTGAGAACAATGCAGTGCAGCTTTAGACTGATCTTTAACTCTGAGCTCTGTCCTGCTCTGACTGGCTGAATTGACTGTTATGCGGATCCGGATGATTTGGAGATCAGGGTAAACAAACCCTACAGAGAGGAAACCGGGCGACGGTCACAGGACTCGGTGTTAGACCGGCCGGTGAAAGGCTCGCGGGCGGCTGTCTGGGTCAGTCCGGttctaaaactgtttaaggcTTTAGAACCGAGTCTTTTAGCACCGGATACATTTATACAGATCGCAGCGTGTTTAACTGCTTTTACATAGATAGAGTTATAGCTTATAAATCTTAGACTTCTCtcctactttcactttcatttcaTCAGAAGTCACTGACTGACTACCGCGGAGACAACTTGAAGAAATGGACCCCGGATCTGGCATGCCAAGAAAGATCCCAGAAGAACAGATTAACAAAATCAAAGAAGCACTAGGGTCTGTAGTCCCTCGATCACTTATAACTCTCATGACTGTGTTCACTCAGTTTAAGTTGGACATTGCTGTAATAGGAGATTCTGGCTCAGGGAAATCTACACTCATTAATGCATTTCTTGGACTGCACCCCGATGATGAAAAGGCTGCTAAAACAGGAGTTGTGGAGACCACAATGGTGGCGAAAATGTATATATACCCAAATAATCCCCATGTAAGGCTGTGGGATCTTCCAGGGATGGGTACGCTCACTTTTGTCGCAAGAAAATATGCTGAGACAATGAAGTTGGAACTGTATGACATGTTCATTGTTGTGGTGTCTGAGAGATTTAAAGACAACAACTTGACTCTAATCAGtgaaattcaaaaacaaaccaagccatTCTATGTTGTCCGCACAAAAATAGACAACGATGTGACTGCACAGAGAAGAAAACACAACTTCAATGAAACTGCTTCTTTAAATCTGATGAGAGACGAATGCTTGAAATATCTACATGAGAAGAACCTGCATCCTCATGTATTCCTAGTGTCATGTCAGGGTACAAAGGGCTATGAAATGCAAAACCTACAGAACACCCTTGAGAACGAGGTGCCAGAGCTCAAAAGAGATGCTTTTCCAATCTTCATGGACAATCTGTTCACCTCAGCTCAAGGGAAAGCAGCGGCCATTAAGCGTCATGCTTTGTCCAAtaagaaaattacagaaaaGGATTTTCAGGAACTACAAAAAATACGAACGCAATTTTCATATGgaaatgggaaagtcaaagcaACACTGGAGGCTTTTAACCACTTTCAACTTGATGTGGCTGTTTTGGGTGAGACAAAATCGGGGGTAACCACCCTGGTGAGTGCCCTAACTGGGCAGGGAAGTGGTGCCAGTGGCTCAATAGATGAAACAACCCCAGCATTGAGTCCCGAGTACCCTGATGTCCGATTTTGGGGTGTTTCGGGAGTAGAGGAAGTTATGAACAGTTCATTGGAGATGAGCctaattttggatcattttgaTTTCTATATAATCATTGTCTCAGACTGGCAGAGGAGCTGCCACTTAGAGCTTGCAAGAACCATAAAAGACTTAAGTAAGCACTACCACTTTGTCCAGACAAAGATTGATTGCCATTTGCAGGCCCAGGAAGACTTGGGATGTACCGAGACTGAGGTTCTGGATGGGCTTCGAGCTCAGTGTGCTGAAGAGCTTCAGATGGCAGGAGCTGCCGAATCACAGCTGTTTTTCATTAACAGTTTGGACAGAAACGCCTTTGATTTTGTCAGTCTGGAGAGCGTACTGAGAAATGACCTGGATACTGTACGGACAAGTGCTTTTGCATATTATGTTGCTAAATGTGCACGGAATCAAGACCCAAAAACCTGTCAGATATTGTAGGTCCTGCATTTGAGCAATATTAGCAAGAGGGAGCACTTAAGATAAAGACATTTATAGACTTTCTCTCCACTTAGTAGGAAAGATTTTTTCTGCTGTTCATTGTGTATTATTAAATTGTATCTTATCACGGAAGTATAATTTTATCTCATACTGTATTAACAAAGTAAAATGCATATTTATGCTAGTTTAGGGACATATTTCATCACATTACAGAGGGATACAGGTCacttatatttataaatgcatcgAATGAAATCCTCTTGTGTTGTTAAATCACGTTAAAgcattattactgtttttattgtagaattttgttttgtcatttgaATATTTCTGGTTTTCACTCCAAACAGAAGTCAACTAAATGATCCAGTAAAGCCAAatgctataaatataaatacttcaAAAGTTATGGTGAATAATGCACAATTCTGGACTTTGGGCTGACTGGCTTCATGAGAAATGCTGCTTTGTGAAATTCCCCTCAGCACACTTTCTCTGCTAAACTAATAAACATGTCAGCTAAGAGACGATTTGAACCAGCTGCTTAAGCAGAGAAATAACCAAACTGTTCTGAATAAACATGAGTGAAAGTTAACAGCTCTGATATAGACCATTTGCTGAGTCTAACTCAGGGGTGTGAACCTTCAGCAACTTCACATACACTGTATGTAGTGATATATAAAACCTGAATTGACCAACCTTAAGGTAAATCCAATGCCTTGTCCATGCTCTTGTACTTATTTTGTTCTTAGTAAAATTGTTGTGAaacattgaaaataaaatatgatgcAATACATGTGTGTGCAATATGTTCTATCAGACTGTGTATGGCAATTTCTTATTGTAATCTGACACCAAATGTAATCCGTAATGTATTTCCAGCGCGGCATAATACCGCCTAAAATCAATGTGAAAAACTGATTGGAGAGCctgccaaaatgcataaaaaatgtgattaagaaTCAGGGAAAACCATGTTGTTGATTTCTGAATGTATCCTGTGGGGGAAATACCTgtgattattaataaaacaaacattaagtTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249568.3 True 3044 mRNA 0.40 3 14266717 14270832

Neighbor

gene id symbol gene type direction distance location
LOC103043509 LOC108428914,LOC108273518,LOC105910609,LOC106023690 coding upstream 10028 14252003 ~ 14256689 (+)
LOC103042889 cblc,LOC103042889,LOC107657700,LOC106577440 coding upstream 19411 14227627 ~ 14247306 (+)
LOC103045349 NA coding upstream 119984 14136719 ~ 14146733 (+)
LOC103045642 yme1l1,LOC108428941,LOC108269264 coding upstream 130741 14120999 ~ 14135976 (+)
LOC103046158 LOC103046158,LOC108428940,LOC107095448 coding upstream 147054 14110525 ~ 14119663 (+)
ccdc129 ccdc129 coding downstream 45253 14316085 ~ 14330564 (+)
ppp1r17 ppp1r17 coding downstream 60566 14331398 ~ 14333825 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding downstream 252040 14522872 ~ 14533374 (+)
cubn cubn,LOC107677149 coding downstream 262768 14533600 ~ 14588128 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding downstream 320010 14590842 ~ 14639053 (+)
G90719 NA non-coding upstream 44447 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 77292 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 261269 14005234 ~ 14005448 (+)
G90645 grik2,LOC107667969 non-coding upstream 677473 13559581 ~ 13589244 (+)
G90625 NA non-coding upstream 763953 13502292 ~ 13502764 (+)
G90818 NA non-coding downstream 85768 14356600 ~ 14357694 (+)
G90836 NA non-coding downstream 242619 14513451 ~ 14514175 (+)
G90941 NA non-coding downstream 590510 14861342 ~ 14861709 (+)
G90946 NA non-coding downstream 643231 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 695027 14965859 ~ 14968245 (+)
npy npy other upstream 1318467 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 1713945 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 2109855 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 2127855 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 3359545 10903683 ~ 10907172 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1163 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 374966 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 391825 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 889383 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 1005310 15276142 ~ 15283055 (+)

Expression


Co-expression Network