rsu1 (rsu1,LOC107677300,LOC107657774)


Basic Information

Item Value
gene id rsu1
gene name rsu1,LOC107677300,LOC107657774
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14590842 ~ 14639053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250370.3
agagagagagagggagggagattAAACCCAGTGATCCAAGTCTGAAGCAATGCCAGCCAGGAGGCAGCTGTTTCCCACTGAGAAGAGGTGTCTTGGTTTACCTCAGCTCACTGTTGGGGTGCTCCATGCTGGAGGAAGAGACAGAGGAGTTTCAGGTTGCTGTGGGCCCCCTTGTGCAGATTTCAGGACGCTGGCCAAAGAATGTGTCTACCATGCAAGAACATGTCCAAGTCCCTGAAGAAGATAGTGGAGGAGAGCAGGGATAAGAGCCTGCCTGAGGTGGATATGTGCGACAGGGGGATCTCCAACATGCTCGACATTCCTGGGTTGTTCACCTTGTCCAACATAACACAACTTGTCCTGAGCCACAACAAACTTTCAACTGTGCCCCCAAACATTGCTGACCTTAAGAACTTGGAAGTGCTGAACATGTTCAACAATCAGATAGAGGAGTTGCCCACCCAGATCAGCAGCCTTCAGAAGCTCAAACATCTGAATCTAGGgatGAACAGGTTAAGTTCACTGCCCAGAGGGTTTGGTTCTCTCCCAGCACTGGAAGTCCTGGATCTCACCTACAACAATCTGAATGAATCTTCACTGCCAGGAAACTTCTTTTACCTTACCACCCTGCGCGCACTCTATCTCAGTGACAACGACTTTGAGATCCTGCCCCCAGACATCGGCAAGCTGGCCAAGCTGCAGATATTGAGTCTGAGGGATAACGATCTGATCTCCTTGCCTAAAGAGATAGGAGATCTGGCTCAGCTGAAGGAGCTGCATATCCAGGGCAACAGACTTACAGTGCTGCCTCCTGAACTggGTAATCTGGACCTGACTGGCCCAAAGCAGGTGTTTAAAGCAGAGAATAACCCCTGGGTGACTCCAATCGCAGACCAGTTCCAGCTGGGAGTCTCTCATGTCTTTGAATATGTCCGCTCTGAGACCTATAAGTATCTTTATGGGCGACACATGCAGGCCAACCCTGAAGCACCTAAAAAGAACAATGACAAGTCCAAGAAGATCAGCCGCAAGCCTCTGGCTGCCAGAAACAAGTGAAGATGAGGAGAGATGATGAGGGGCCCTCGTCTGCCCTTTCCGAGCTGGACCTCACTGCATGTGCCTTTGCTcacttttctatttatttaccaaAGGAACACAGATCAATTTTTATACTCTTTCTGTATTGTGGTATCACCTTCCGCATGTGTGGCAGTGTCACCTTGTCCCTGCCATGTCTCAGAACAGCCTTACTGAGTTGTTTTTTGCCTGCATTTACTATATAGAGCCTCTTTATTAACTTACTGTATTATAGTAGGTGCCTTTCTTCTTACTATATGCCCAAGTGTTACTTTATTCCTATTCAAGCTGAATTTGATAAAGTTTTCAGGAAATTTTATTTGTGTCCTCAAATGATCCCAAAATAGCTTGAATTAAAATTGCCTAATCtgaattctcatttgtgaattTAAACAGGTTCAGACCAAACACACAAAAGTTATAAGGATAAAATATAACACCTTTAAGTATTACGATTATAAGGTTTACGCAGATtcataataaagtaaaatcacGTTGTCACCCGTAATCGGGTGAGACAAACCTCAAGCTTGTAAAAGGGATTTAAAAGCCATAGTTTGCCAAAAAATTTGTTTATATCTTACTGCAAAACACTGTGTAGATTGTAGTTTTtaacatattacatttttaatgttttattgctgTTATGCTGTTGTTATTTGTTACAACTAATCAGaacaatcaagttccaattttCTACTTTCTCATTCCTGGAAAGGTTATGCTATCACTTTTAGGAATGCCACCTAGcaaggtttatttttttatttcataaatacATTGTGTTGTATTGAATGGTACCTTAAAATAACTACTTGTTTAgaacataaaagcattataacatttaatattaatggcATTTTGTTGAGACCCCTATTCTCAGCGACATATACTtttacatgccaaaagtcatggaacaggaGTGATTATCATATCCtctgacttttgccatgtgcaATGAAGGATGAAGAATCCTGCACTGGCTCCTCCTGCATtggatgtggatgtgatttcttgTGAAGTCAAACATACAGTTCTAGCAGGAAGCTGCTGGTTactatcattaccacccactgtgctgtccacttcAATCAATCCATGTACATACATACTCATGTCCCATGATTTTGGCATATCTGTGTAGGtcagtgtagtgttaggagtcttgcccatggACTATTATTGATGTAGTGTGGAGTGCTTGCCCAGCTGTCCtgccacaataaaaaaacagtgttgttAACCACTACACTACTAACCATATACATATTATACCTTCTCTGCGAAACATAATCTATATTTGTCCATTTTCTTCCACTCTGAATGTGAACAGTACAGTTTACTATTCAGACAGACAAGTAGCAAAGCCGTCTGCAGTGGAGAAGAAAGAATATTATCATATCTCAGTTTGATTTGAGCTGTCTAAACAAGGCACGCAGCTTTTCTGTAGAGCAATTTCTGTCCTCCGGCGCCGGGCTCAGCAGGGGTGGCTGTTGCGTAACCGGAGGGGGATTTTGAAGGGGTTTTAGGGGTCTTAGCCATGTCTGTGCAGGATTGTATCCTGCCTCCAGGGGCATGCATCTGTCTCTTCCCTCTTCCATGGCTCTTGCTTTTAATGACTGATATGAATTGCTGCAAGTTTTGAATGGTTTACAAAGTGGAGGCCAGTCCCACAGCAACTtcgcagctcatttaagagtgTTAACAAGTTATTCAAACAATAGACAGCTTGTTCTTGTAAAAACGCATGTCCCGGATGGTCAGCCAGGAGTGTTCAGTATTGTTTGgatctgtctctccatgtacaTGATGGTGCTGTTctcatgactgtactgtacccaaacTGATAATCATTGTGCGAGAACTCAAATGTAAAGTTATCTTTAATATAGTGAAATTTATAAAGTGGATTAACATAGGATAGAAACTACAGAATGCAACAAGGCCTGTTCGCATGTGTTTGTCAAGTATTGTTCAGGATATGTGGAATATTATTTACTCTGGTCCTGAAATATTTCATCACAATGCTAAACGAAGAATGTCAAATGTCCCAATCATCATATGTCGTATTTGTTTCAATGGAACTACtttgaataaaataactaaaaaataca
>XM_007250371.3
GTGTATCAGCTTCCGGTTGGGCGTGCGGCAGAGTTGTCGCTCTTAGAAACAGCGGAAGATTGTTGTGCCTGAGGACAAATATTTCTATATACAACTATAAACTGTTTTACAAGCGTCCATTCCGTCCGGCGAGAACATGTCCAAGTCCCTGAAGAAGATAGTGGAGGAGAGCAGGGATAAGAGCCTGCCTGAGGTGGATATGTGCGACAGGGGGATCTCCAACATGCTCGACATTCCTGGGTTGTTCACCTTGTCCAACATAACACAACTTGTCCTGAGCCACAACAAACTTTCAACTGTGCCCCCAAACATTGCTGACCTTAAGAACTTGGAAGTGCTGAACATGTTCAACAATCAGATAGAGGAGTTGCCCACCCAGATCAGCAGCCTTCAGAAGCTCAAACATCTGAATCTAGGgatGAACAGGTTAAGTTCACTGCCCAGAGGGTTTGGTTCTCTCCCAGCACTGGAAGTCCTGGATCTCACCTACAACAATCTGAATGAATCTTCACTGCCAGGAAACTTCTTTTACCTTACCACCCTGCGCGCACTCTATCTCAGTGACAACGACTTTGAGATCCTGCCCCCAGACATCGGCAAGCTGGCCAAGCTGCAGATATTGAGTCTGAGGGATAACGATCTGATCTCCTTGCCTAAAGAGATAGGAGATCTGGCTCAGCTGAAGGAGCTGCATATCCAGGGCAACAGACTTACAGTGCTGCCTCCTGAACTggGTAATCTGGACCTGACTGGCCCAAAGCAGGTGTTTAAAGCAGAGAATAACCCCTGGGTGACTCCAATCGCAGACCAGTTCCAGCTGGGAGTCTCTCATGTCTTTGAATATGTCCGCTCTGAGACCTATAAGTATCTTTATGGGCGACACATGCAGGCCAACCCTGAAGCACCTAAAAAGAACAATGACAAGTCCAAGAAGATCAGCCGCAAGCCTCTGGCTGCCAGAAACAAGTGAAGATGAGGAGAGATGATGAGGGGCCCTCGTCTGCCCTTTCCGAGCTGGACCTCACTGCATGTGCCTTTGCTcacttttctatttatttaccaaAGGAACACAGATCAATTTTTATACTCTTTCTGTATTGTGGTATCACCTTCCGCATGTGTGGCAGTGTCACCTTGTCCCTGCCATGTCTCAGAACAGCCTTACTGAGTTGTTTTTTGCCTGCATTTACTATATAGAGCCTCTTTATTAACTTACTGTATTATAGTAGGTGCCTTTCTTCTTACTATATGCCCAAGTGTTACTTTATTCCTATTCAAGCTGAATTTGATAAAGTTTTCAGGAAATTTTATTTGTGTCCTCAAATGATCCCAAAATAGCTTGAATTAAAATTGCCTAATCtgaattctcatttgtgaattTAAACAGGTTCAGACCAAACACACAAAAGTTATAAGGATAAAATATAACACCTTTAAGTATTACGATTATAAGGTTTACGCAGATtcataataaagtaaaatcacGTTGTCACCCGTAATCGGGTGAGACAAACCTCAAGCTTGTAAAAGGGATTTAAAAGCCATAGTTTGCCAAAAAATTTGTTTATATCTTACTGCAAAACACTGTGTAGATTGTAGTTTTtaacatattacatttttaatgttttattgctgTTATGCTGTTGTTATTTGTTACAACTAATCAGaacaatcaagttccaattttCTACTTTCTCATTCCTGGAAAGGTTATGCTATCACTTTTAGGAATGCCACCTAGcaaggtttatttttttatttcataaatacATTGTGTTGTATTGAATGGTACCTTAAAATAACTACTTGTTTAgaacataaaagcattataacatttaatattaatggcATTTTGTTGAGACCCCTATTCTCAGCGACATATACTtttacatgccaaaagtcatggaacaggaGTGATTATCATATCCtctgacttttgccatgtgcaATGAAGGATGAAGAATCCTGCACTGGCTCCTCCTGCATtggatgtggatgtgatttcttgTGAAGTCAAACATACAGTTCTAGCAGGAAGCTGCTGGTTactatcattaccacccactgtgctgtccacttcAATCAATCCATGTACATACATACTCATGTCCCATGATTTTGGCATATCTGTGTAGGtcagtgtagtgttaggagtcttgcccatggACTATTATTGATGTAGTGTGGAGTGCTTGCCCAGCTGTCCtgccacaataaaaaaacagtgttgttAACCACTACACTACTAACCATATACATATTATACCTTCTCTGCGAAACATAATCTATATTTGTCCATTTTCTTCCACTCTGAATGTGAACAGTACAGTTTACTATTCAGACAGACAAGTAGCAAAGCCGTCTGCAGTGGAGAAGAAAGAATATTATCATATCTCAGTTTGATTTGAGCTGTCTAAACAAGGCACGCAGCTTTTCTGTAGAGCAATTTCTGTCCTCCGGCGCCGGGCTCAGCAGGGGTGGCTGTTGCGTAACCGGAGGGGGATTTTGAAGGGGTTTTAGGGGTCTTAGCCATGTCTGTGCAGGATTGTATCCTGCCTCCAGGGGCATGCATCTGTCTCTTCCCTCTTCCATGGCTCTTGCTTTTAATGACTGATATGAATTGCTGCAAGTTTTGAATGGTTTACAAAGTGGAGGCCAGTCCCACAGCAACTtcgcagctcatttaagagtgTTAACAAGTTATTCAAACAATAGACAGCTTGTTCTTGTAAAAACGCATGTCCCGGATGGTCAGCCAGGAGTGTTCAGTATTGTTTGgatctgtctctccatgtacaTGATGGTGCTGTTctcatgactgtactgtacccaaacTGATAATCATTGTGCGAGAACTCAAATGTAAAGTTATCTTTAATATAGTGAAATTTATAAAGTGGATTAACATAGGATAGAAACTACAGAATGCAACAAGGCCTGTTCGCATGTGTTTGTCAAGTATTGTTCAGGATATGTGGAATATTATTTACTCTGGTCCTGAAATATTTCATCACAATGCTAAACGAAGAATGTCAAATGTCCCAATCATCATATGTCGTATTTGTTTCAATGGAACTACtttgaataaaataactaaaaaataca

Function

symbol description
rsu1 Predicted to be involved in signal transduction. Orthologous to human RSU1 (Ras suppressor protein 1).

NR:

description
ras suppressor protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250370.3 True 3191 mRNA 0.42 9 14590842 14639053
XM_007250371.3 False 3105 mRNA 0.41 9 14596493 14639053

Neighbor

gene id symbol gene type direction distance location
cubn cubn,LOC107677149 coding upstream 2714 14533600 ~ 14588128 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding upstream 57468 14522872 ~ 14533374 (+)
ppp1r17 ppp1r17 coding upstream 257017 14331398 ~ 14333825 (+)
ccdc129 ccdc129 coding upstream 260278 14316085 ~ 14330564 (+)
LOC103042587 NA coding upstream 320010 14266717 ~ 14270832 (+)
LOC103045139 LOC108428921 coding downstream 87935 14726988 ~ 14733577 (+)
steap2 steap2,LOC107555016,LOC107657773 coding downstream 95839 14734892 ~ 14893717 (+)
LOC103046458 mmp16,LOC108428959 coding downstream 233838 14872891 ~ 14961726 (+)
LOC103021625 LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319 coding downstream 427039 15066092 ~ 15075982 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding downstream 437295 15076348 ~ 15094963 (+)
G90836 NA non-coding upstream 76667 14513451 ~ 14514175 (+)
G90818 NA non-coding upstream 233148 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 368572 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 401417 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 585394 14005234 ~ 14005448 (+)
G90941 NA non-coding downstream 222289 14861342 ~ 14861709 (+)
G90946 NA non-coding downstream 275010 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 326806 14965859 ~ 14968245 (+)
G90994 NA non-coding downstream 367967 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 379833 15018886 ~ 15019404 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 316144 14271995 ~ 14274698 (+)
npy npy other upstream 1642592 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 2038070 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 2433980 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 2451980 12135279 ~ 12138862 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 6745 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 23604 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 521162 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 637089 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1756161 16395214 ~ 16419380 (+)

Expression


Co-expression Network