LOC103021625 (LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319)


Basic Information

Item Value
gene id LOC103021625
gene name LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15066092 ~ 15075982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606111.2
atgtgtttcaatTTGTTTTTCCTCAGGGAAGAAAAAGCTCCTTCTCCTCCACGTCCAATCATAATAAACAAGTACTCAGATGATCAACTTCGAGATGTAATCAAACGAATGCGTGAAAGAACGAACATGTATAAGGAGAAGGTCGTTGACCCCTATGCATCTTCCCCAGAGCGGAGCCCTCCAGTCACACCTGTGCTGAGAAAAGTAGATTACTTGAAAAagcaagaggaggagaagaagagaaaagaggaggaggagagaaagaaaaaggaggaggaggagagaaagaaaaaggaggaggaggagagaaagaaaaaggaggaggaggagagaaagaaaaaggaggaggaagaaaagaagaaaaaggaggagGCCAAAAAGGCTGCAGAGGcagagaagaaagaagagaagaaagaagagaagaaggaggaaaagaaagatgaCAAGAAAGCAGAAGCTGATCCAGCCACAGAGGAGAAGTCTTTTTGGCCAAAAATCGAGTGCACCTTCCTAGATGTCCTGTTGAAACCTATTGAGGACAAGATGGATAAAGTCCTGGGGACATCCATCGACCCATTTACAGATCGCAGATACATCACTTGGCTAAGCATTGTGACCATCGCCTTCAACTACAACCTGTGGTTCATACCTGTCCGCATGGCTTTCCCCTATCACACTCCTGGGATGATTCCTATATGGTTTACCTTAGATATCTTGGCTGACCTGATGTACCTCATCGACATGGTCATTTTTCAGCCACGGCTGCAGTTCTGTAGGGGTGGGGATATCATCTTTGACAGAGCTGTCATTAAGAAGCACTACAGGGAGACTTCCAAATTTCAGAATGCCCTGATATCAGTCTTGCCTCTGGATGTGCTGTATATTCCATTTGGCTTCCATTCCATCTACAGAGCCAATCGCCTCATGAGGtttgaggcCTTTTTTGAGTTCAGTGATCGTCTTGAGGGAATTCTGACCAAGGCTTACATCTGGAGAGTTATTCGTACCATTGGATATCTTCTGTTCATCCTTCATCTCAACGCCTGTGTCTATTATGTAGCCTCTGCCTATGAAGGCATTGGAACAACCAAGTGGGTCTACAGTGGAGTAGGGAGTGCGTACTTGCGCTGTTACTATTTTGCTGTGCGGACCCTGATCAACATTGGCGGACTGCCAGAGCCTCACACAGTGTTTGAGATCTCGTTTCAGTTgacaaacttttttgttggtgtCTTTGTCTTCTCAAGTTTGATTGGGCAGATGAGAGACGTCATTGGAGCAGCCACTGCTGGACAGACTTATTTCCGAGCCTCTATGGACTCATGTGTTGCCTATATGGTGACTAATCGTATTCCTAAACTGGTGCAGCACAGAGTGCGTACATGGTACAACTACACCTGGGACTCACAGGGCATGCTGGATGAGTCAGAGTTGCTGGTGCAGATGCCTCTGGTGATGAGAACAGCCATCGCTGTGGACATCAACCTCGCCACATTCCAGAAGATTGAACTgtttaagGGATGTGATAATCAGATGCTGGTGGACATGTTGCTGAGGCTGAAGTCTATTGTCTATCTGCCTGGAGACTTTGTGTGTAAGAAGGGAGACATTGGTAAAGAGATGTACATCATCAAAGCTGGGGAGGTGCAGGTGATTGGCGGACCTGACAACAAAATTGTGTTTGTGACACTAAAGGCAGGCTGTGTGTTTGGCGAGATCAGTCTTTTACAGTCCTCAGCTAATGGAGGGAACAGAAGAACAGCTAATGTGGCAGCACACGGATTTGCCAACCTCTTCGTGCTGGATAAGAAAGACCTCAATGACATCCTGGTTCACTACCCAGAGTCACAGAAAGTCCTGGCCAGGAAGGGAAGGAAACTGATGAAAGCTAAAGGTCCAGCTGCTGCTAAAgtagaagaagagaagaagaaaggcCTGGCGCTGTTTGGACCCAAACCTCCAACTCCCAAAATGCTCCGTGCTTTTGGAGGATTCCATAAAAAAGGATTTTTGGACAAACTTAAGAGTGCTAAAGATGCATaataaatgcaacaaaatgacagtcatattattttcattttgaagTGACAAAAAGATGtagtacattttcatttttgtaaataGTTTGGATTCTTGaacatttgtaacatttatggATTTTAACCATTTGTGAATTTGTACAAAAGTGTAATAAAGGagatatttttcaaaataa

Function

NR:

description
PREDICTED: cyclic nucleotide-gated cation channel beta-3-like

GO: NA

KEGG:

id description
K04953 CNGB3; cyclic nucleotide gated channel beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606111.2 True 2215 mRNA 0.44 15 15066092 15075982

Neighbor

gene id symbol gene type direction distance location
LOC103046458 mmp16,LOC108428959 coding upstream 104366 14872891 ~ 14961726 (+)
steap2 steap2,LOC107555016,LOC107657773 coding upstream 172375 14734892 ~ 14893717 (+)
LOC103045139 LOC108428921 coding upstream 332515 14726988 ~ 14733577 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding upstream 427039 14590842 ~ 14639053 (+)
cubn cubn,LOC107677149 coding upstream 477964 14533600 ~ 14588128 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding downstream 366 15076348 ~ 15094963 (+)
abcd3 abcd3,LOC107677270,LOC107712812 coding downstream 54241 15130223 ~ 15144305 (+)
LOC103022978 LOC108428965 coding downstream 69376 15145358 ~ 15155018 (+)
cnn3 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107739018,LOC107657766 coding downstream 146841 15222823 ~ 15234815 (+)
LOC103024964 tmem56a,LOC103024964,LOC108428968,LOC107712816,LOC107677262,LOC107657764,LOC107560653 coding downstream 172819 15248801 ~ 15274896 (+)
G90996 NA non-coding upstream 46688 15018886 ~ 15019404 (+)
G90994 NA non-coding upstream 58121 15007020 ~ 15007971 (+)
G90952 NA non-coding upstream 97847 14965859 ~ 14968245 (+)
G90946 NA non-coding upstream 150066 14914063 ~ 14916026 (+)
G90941 NA non-coding upstream 204383 14861342 ~ 14861709 (+)
G91009 NA non-coding downstream 26390 15102372 ~ 15103131 (+)
G91036 NA non-coding downstream 45876 15121858 ~ 15123493 (+)
LOC111193336 NA non-coding downstream 147153 15223135 ~ 15224692 (+)
G91075 NA non-coding downstream 162404 15238386 ~ 15239432 (+)
G91080 NA non-coding downstream 212609 15288591 ~ 15288942 (+)
LOC103045856 NA other upstream 292725 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 413810 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 791394 14271995 ~ 14274698 (+)
npy npy other upstream 2117842 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 2513320 12532301 ~ 12552772 (+)
alg14 alg14,LOC107739035 other downstream 84233 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 200160 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1319232 16395214 ~ 16419380 (+)
rcc1 NA other downstream 2282857 17358839 ~ 17447933 (+)
G91678 NA other downstream 2835919 17911901 ~ 17912443 (+)

Expression


Co-expression Network