LOC103044318 (mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422)


Basic Information

Item Value
gene id LOC103044318
gene name mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12532301 ~ 12552772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121596
GCTGGGGTGTGAAGATGGCGGCTCCCTCGGAGTTGTTTTGCTGGAAGGGCGGCTGGGGTTTACCTTCAGTGGATCCGGACAGTCTCATTGTTCTGGCTTATGCACGCTTTGCTGGTGCACCCCTGAAAATTCACAAGATCTCCAACCCCTGGAGAAGTCCCACAGATCAACTGACTTGTGCTGGCAGAAAGAGTCTGCACAATGGATTTAATTCTGTCCACACGTGGCGGAGAATGATCTGAACCAGGACTGTTTGAGTTGGAAGATGACTGGAGAAATTTGGCCAGTGCTGGACCTCTTCTTTCCTCTAGCTGTGGccttatcttattttttttccttttctttccttGTTTTTACTGTGTGTCCTCTTTGTCCTCTGTATCAGTCAAGCATGAGAGTTCAGCTGCATGAGAAGCATTAGCAcaaagtaataatttaataattgtcAATATTGTGGTTAATGTTGATGTTTCACAGTCTGCAGTTAATGAACTTCTAATAAACTGCTAATAA
>XM_007249663.3
TTATTGTAGATCGCGGTGTTTCCGGCTGAGTGGGGTTCAGTTCCGTGGTGCTGGGGTGTGAAGATGGCGGCTCCCTCGGAGTTGTTTTGCTGGAAGGGCGGCTGGGGTTTACCTTCAGTGGATCCGGACAGTCTCATTGTTCTGGCTTATGCACGCTTTGCTGGTGCACCCCTGAAAATTCACAAGATCTCCAACCCCTGGAGAAGTCCCACAGGTTGTCTTCCTGCCCTGAAGACCAAAGATGAGGGAAGCTTCTCACAACCCAACAAGATCATCATTCAGCTCAGGAAACAGaAATACAATGCTGATTATGACTTGTCAGCTAAAGAAGGAGCGGACACGCTTGCGTTTATCTCCTTGCTGCAGGAGATGCTGATGCCTGCTCTGATCTACACTCTGTGGGTTGATCCTAAGAACTATGTGGAGGTGACACGGCGATGGCATGCAGACAACATCTCCTTTCCCCTCAACTTCTTTCTGCCCAGCCGTATGCAGCGGCAGCAGCTGGAGAGGGTGCAGCTCATGAGAGGAAACAGAGCTCTGGAGGCTGGAGAGGAGGCTGAGAAAGAGCTGAACCATGATGCTCTGGAGTGCATGAATCTTCTGTCTCAGCGTCTGGGCTCTAACAAATTTTTCTTTGGGGATTCGCCATCTTCCCTTGACGCATATGTGTTTGGCCACTTGGCTCCTCTTCTGAAGATCAAGCTGCCCAGCAGCAGTTTGCAGCAGCATCTGAAGTCTCTGGAGAACCTCGACAGCTTCTGCTGTAACATCCTGTCCCTGTACTTCCCCAACGAAAGCCGAGAGGGAGTGGGACGGCCAGTGTCCAGCACTCCGGAAGGGAGCGAGTTTGATAACGAGCCGTATAAACGGCGCAAGCAGCTGCTGTCGGTCCTGGTGGCCGTGGCAGCCATGTTGAGCTATGCCCTCCTCACTGGCATTGTTGCTATTGAGCATGTGCCAGAGGAGGTGCCGAGAGGAGGCAGGACCTCCATGAGAGCTGTTcacgaggaagaggaggagtagAGGATGACTGTGTGCACTTGATTGATCCAGGTGGGATGAAAATCAACTCAAGATTCAGTACATGACTGACTTGAGTTTGATTTGTAAATTAAACTAgggcttttgtttgttttctccaGTATTTACTGCTcgataatctttttttttttttttcactttttccagagttgtttccttttttccttcgTTTGGTGCTACACGTTTTAGTGTATTCAAGGTTTTACGTTTTTGAACTTATAAGAGTATATCTTAAGGCTCCAAAATTGCTCTGCACTTTAAGTTGGTTTACATATCTCTGTTATCTGAAATTCATTTGTGGACCAAATAACTACTAAAAAGTGTACTAAGTAATTTCACCTTGTGCTTTGTGTAAATGGAGTTGATCAATACCTTCTATTCACAGCACTTGAACAGAAATCTCTATAGCCTTGTTCACTGGAAGCTTTACACGTGTTCCTGCTCGTCTTGGCAATATTCCTGCCAAATTCACTCAATGACTCAACACACAGATTTTCACCAGGGTAAATAATGTCTTCAGTTGTTCTCATATGATGTTATCtttattgtcatatttttaatgtttgttctGATGACTTTGACGCACATTGTGTAGGTCAGTGTTTGAAGTAAGAGCTTTAATCAAAGGGTGTTTTGCCTGGTTGCAACATGATTTTTGATAAACTCATGTTATTCGCTATTTGAAATATCCAAAAACAGTTGAGCGTGGCTTAGCAACACAGATGATTCCAAAAATATTTATCCAAATGTAGCTCTCTAAAGCAGCCTGAAAATGAGGCTCTATGCTCTTGCTTAAGGACTTTTCCTTTTAATGCTTTACTTTTCTTTGCTTAGAATTTCTAACAGGGTAAACCTtgtatcttcatttttaatCTAGCAGATGTTCTTTGTATTGTACAATTACAATTTCATGacaaacggaccaatagaaatactccaaaatTAAGCCTTGTCCACACAAatctggatacttcaacaaaaaaaagaaaaagaaaggtttTTTGGTCTGTACACAAAAACATCACTATTGGTCAActgagctctttgaagagctttgAAGAGGTGAAAAcctttaaatgttgttatatGGATACACAAggaataaaaatacaacaattactttttgtgaaaaacaatgTATTTGGATAAATACTGCtatattacaaataaattatgCTATTTTTAGATTCAGAGTCCTGCATAGTAACTACTTAGTGAGTAGTTATCTTTATGAGGTACTATCACTTCATAAAGATCTAGCATGCTCAAGAAAGCTTTTCACCTCTGTGTggatgaaaatatttttttttttgactgaagGAAGggaaatctgtttttaaaagtaTCTGGATATGTGTGGACAGAGCatgaccatattttatttttatatcgaCTTTCATTGAGGGCTTGGAACGTTTTTTCCAGTCTCAGGTAAAGTTCCCCTTTTGAAGCTATAGGTTTTTTGCAGGACAGCAACAATATCCAGGGAGGAAAGTGCACATGCGTGCACATATGTAGGTCATTATCTATTATGTCTATAGATATTTGGTTTGTGAAGTCTGCTCTTTCTGCACTGGTCCTAAATCTTGCACTTCTGCACCTATCACACTCTGTCTGTACTGCTATAGACTGCTAATGGTAACCTGAAGTAAATTTCTTTATCTGTGTCCGTATCAAAATCACGTTCGGCAGTCCATGAATGATTCCAGTATAACCATATAACCATATagtcaaattaatttaaaacatggcATTATAGCTGGTTGAGGGTGTAGATATCTGCAAGGCCTCTTAGTCAGGATTAAGGATGCAAGTTTTCGAAGAAGTGAAGAATTTTTCAACTGAGAGGCTAATAGAAAATTCTAGTGCTGAGCTTTAACAGCTTGTTCTCTTATACTGGTGTTTATgctttgtaaatatatttgtggTAAATTCTGTCTATTTtcttaacttaaaataaatgtgctttGAAACCA

Function

symbol description
mtx1a Predicted to be involved in mitochondrion organization. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of SAM complex. Predicted to be active in cytoplasm. Orthologous to human MTX1 (metaxin 1).

NR:

description
PREDICTED: metaxin-1-like

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17776 MTX; metaxin

RNA

RNA id representative length rna type GC content exon number start site end site
TU121596 False 513 lncRNA 0.44 3 12532350 12541876
XM_007249663.3 True 3020 mRNA 0.41 8 12532301 12552772

Neighbor

gene id symbol gene type direction distance location
nudt17 nudt17 coding upstream 19366 12505041 ~ 12512935 (+)
LOC103045643 si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177 coding upstream 28173 12492664 ~ 12504128 (+)
LOC103029364 NA coding upstream 41915 12483951 ~ 12490386 (+)
LOC103029682 NA coding upstream 49739 12473174 ~ 12482562 (+)
adam15 adam15,LOC107717790 coding upstream 60271 12425639 ~ 12472030 (+)
thbs3 thbs3,thbs3a,LOC107666739,LOC107719129,LOC105896172,LOC106605431 coding downstream 4238 12557010 ~ 12585238 (+)
hfe2 hfe2 coding downstream 38286 12591058 ~ 12599849 (+)
LOC103036326 txnip,LOC103036326 coding downstream 54516 12607288 ~ 12610047 (+)
ankrd34a ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270 coding downstream 88649 12641421 ~ 12665395 (+)
ttc24 ttc24 coding downstream 191464 12744236 ~ 12760023 (+)
LOC111193294 NA non-coding upstream 1306 12530040 ~ 12530995 (+)
G90370 NA non-coding upstream 22924 12508882 ~ 12509377 (+)
G90321 NA non-coding upstream 160065 12368843 ~ 12372236 (+)
G90245 NA non-coding upstream 242210 12286434 ~ 12290091 (+)
G90227 NA non-coding upstream 333504 12198521 ~ 12198797 (+)
G90382 NA non-coding downstream 48730 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 174593 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 239740 12792512 ~ 12792983 (+)
G90488 NA non-coding downstream 356588 12909360 ~ 12997600 (+)
G90489 crtc2,LOC108436548 non-coding downstream 358766 12911538 ~ 12913057 (+)
G90199 cct3 other upstream 375439 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 393439 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1625129 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1741173 10780102 ~ 10791128 (+)
G89806 NA other upstream 1843481 10688266 ~ 10688820 (+)
npy npy other downstream 392014 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1719223 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2093026 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2109885 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 2607443 15160215 ~ 15216508 (+)

Expression


Co-expression Network