G90321


Basic Information

Item Value
gene id G90321
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12368843 ~ 12372236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121510
TCCGCAGTTCACTGAGTGGGGGGCAGTCAGAGGAACTAGACTGTGAAGTGGTCCTGAGCCGCCTCTGGATTGGCTGTTCCTCTTGGGTTTCCTGAAGTACGATTTCCTCTGTCTGGCCggaggaaacactgagagacTGAGGCACAGTTGATTCTGAGGCAAAAGTCCACTGCAGTGACTCATTGTAGTCTTCTGGTAATTCGAATTCCCACTCATTTATtccgtcttcttcttcttccactgGTCCAAAATCACTAATAAACTCCGCACCATCAATCTTTAAGGTTTGTGTAGATGAAGATGTGTGTTCAGCATCAGATGCTGAGAGAGCCTCTTTAGTGGACACACCCTCTACCTCACTAGCTGGAGCATCATCTTTCTTTTCTAATATCTCCTGCAGTGATGTTGGAATGCCTACGCTCCAGTGCTTGGATGTGGAGGCTTTTTCTGAGGATGACATGGTGAGGGTGCTGTTGAGCTGAGATTTGGGCCGAGAGGTGGAGCTCTTGTCGGGAGGGTTTTTAAGTGCTGGAGCAGTGCAAATAGGATCCGGTGTGGGGGGTGAGGAGAGGCACTGTTCTCGACCTGCTTTGAGGTTTGTGGTTTCAGTCTCAGGAACTGTGGAAGAGGGCAGGTTGTCATCTGGCTCCTCAGCAGCTGGAGAAGAAGCCCTGCTATGCATGCTGATGTTACTCTCGTACACAGAATCAGCTGGTGCCTGCACTGGAAGCTCATACTGGGGCTTCTGGGGTGCCTGAGCAGGACACTCACTTTGGCCTAGAGTGCTGGATGCACTTGGAAGAGTTTCAGTAGCAGAGAGTGGGGACTTGCTAGAAACAGTGGTGGCTAGTTCTTTATTACTGCTGCCTGGCACCAGATGTGATGATTTCTCCAAGATTGCAGCAGTGAGGATGTTCTGAGTATTACAGGCCACATTGACTGCTACTGGAGGCACACTGGGTGGTGCTGTGATGAGAAGACTTGGCTGTGGTGCGTAGGTAAGAATGGGGGTCTGGTTTACAGTGGAAACAGTAGCAAACTGCTGCATAGGTTCGTTGTTTTTGAGAAGAGTGAAGAGAAGAGGATTGGACTGGACAAGGCCAGGCTGAGCAGGTTGCAAAAAAacagtctgagcagtagagATGCCCTGATAGACAGGCATGGGGTCACTAGTGGAGGCAGCCTGTAAAAGGTGATTAGAGTTCAAACACTGATTTGGAGCGGACTGAACAGAAACAAACTGAGACACAGGGAAACTTTGCTGCATTTGGCCTGAAGGTAATGTATTCGGCTGGACAGACGGAGCAGACAGAACTACACTGGAAGGAGACTGATGACCCACAGGCCCAGAAGGATGAAGTACGACAGAGCGGGACTGGGCCACAATTGTGCCAACAGTGCTAGAAGACTGGGATAAGGCAGTCTGGCGTGAAGAAGGGTAGATGATGGAGGTCGAGAGTTGGGACATAGAGGACTTAAAGTTCAGATGAGGTGCTGAAACAGGGATATTACCAGTCTGAGGTACTGGTTGAGGTAGAAGCTGAGGTGTTGGTTGAGCAGAACCAGAATTTGCCATTCTCTGGTTATGATTCAATCCAATAATACTGTTCGAAACAATCTGGCCTTGTACAGAAAATTGAGTGCGAGTTTGAGGCTGAGGATGGGAAAGGCTTCTGTTAACTCTCTTAGACTGAGTGGGTTGGGGGCAGATGGAGTGCGTCGAGACAGGCTGAGGCAAAACTGGGGTCACCTGCACAGGTACGGAGTCAGCAGTATTTGAGCTCTGAGGGGGTTGGACAGGAGCATTGAGAGGGGACATAGAGGAAGCACTAGCATGGCTCACGATAGCAGCTTTAAAAGAGAGCTGCGCTGAATTTAAGGAAGTGGGGACTGGCAGAGTCTGTTCAGACTGAGGCTGGTCTGGAACACTCTCTGACCCTGCGTGAGGTAATGACTGAGGGGTTTCAACAGACAGGTTGTTTAAATTCACAGAGGAGTTGTATTCTTTGGCTGCACCATAAGGATCATGGTCGTTCGTGGGTTTTATAACAACAGTATGAGGAATTCTGACTGCTTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121510 True 2080 lncRNA 0.49 5 12368843 12372236

Neighbor

gene id symbol gene type direction distance location
LOC103037179 LOC103037179 coding upstream 8196 12339941 ~ 12360647 (+)
LOC103021300 LOC108436571,LOC108267614 coding upstream 35050 12312736 ~ 12333793 (+)
LOC103022359 LOC103022359,LOC108436572,LOC108267606,LOC107549232,LOC107741768,LOC107597968 coding upstream 60669 12293185 ~ 12308174 (+)
LOC111193332 NA coding upstream 170410 12196386 ~ 12198433 (+)
LOC103025286 NA coding upstream 221364 12141688 ~ 12147479 (+)
dcst1 NA coding downstream 15667 12387903 ~ 12424217 (+)
adam15 adam15,LOC107717790 coding downstream 53403 12425639 ~ 12472030 (+)
LOC103029682 NA coding downstream 100938 12473174 ~ 12482562 (+)
LOC103029364 NA coding downstream 111715 12483951 ~ 12490386 (+)
LOC103045643 si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177 coding downstream 120428 12492664 ~ 12504128 (+)
G90245 NA non-coding upstream 78752 12286434 ~ 12290091 (+)
G90227 NA non-coding upstream 170046 12198521 ~ 12198797 (+)
G90188 NA non-coding upstream 259372 12107808 ~ 12109471 (+)
G90159 NA non-coding upstream 350501 11992754 ~ 12018342 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding upstream 388534 11970116 ~ 11980309 (+)
G90370 NA non-coding downstream 136646 12508882 ~ 12509377 (+)
LOC111193294 NA non-coding downstream 157804 12530040 ~ 12530995 (+)
G90382 NA non-coding downstream 229266 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 355129 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 420276 12792512 ~ 12792983 (+)
G90199 cct3 other upstream 211981 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 229981 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1461671 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1577715 10780102 ~ 10791128 (+)
G89806 NA other upstream 1680023 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 160065 12532301 ~ 12552772 (+)
npy npy other downstream 572550 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1899759 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2273562 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2290421 14662657 ~ 14773367 (+)

Expression


Co-expression Network