G90245


Basic Information

Item Value
gene id G90245
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12286434 ~ 12290091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121417
TTCTGCAATTAGAACAAACTATtcaaaactttattatttaagtctaatgtaaacaaatatttatttcagtttcaCAATGGTTATTTATGGAGGTCCTTGGGTTCATTGTTAACAGTAAAACAAGCATAACATCTTTTTATAACTGATTGCCAGCTCTGCAGCTTGATAGAGATTCTTCTTCcttatttcaaaatgaaaatCTTCAGTATCTGCATTTTTGTGAACTATTTATGTACTTGAAAACTTATTAAACTAGGAATATGCCATTactgcatataaaaaaataggtcTTTTAGTCAACAATCAAATAACAAACATTTAACACTGTCTGCAGCAACACAGCCACACTGTTAAGGTGGGACAGCAATACCTTTCCAGGGAGCTCAgctttttaatacagtataaagcAAGCATTTAGCCAAAATTAAATCTGAACTGCACAATTTAAATTATAGCTTAAGTTAACAATACACAAAGCTATGAAAGAGGCAAGGTGCAACCTTTATCTGCAGGAAAATGGCTAAACCTCACattgcaaaaacacacagaaatgtaACTCTaaaggggaaagaaagaaaatcaagcaaaaataatgttgCCCATTCTCATATACCATGCTGATTATTAACACCAGTGGCCAATGAAGAGCATTACTTTCAGTTAAGCTCAACACCATTTTAGAACACTTAACCATAAACCAGACTAAGATCATACATTTAATGCCAAGAAATCTTTTTAACTTAGCAAATAGCCTTAATTGAAGTGCTTTCTTAGGTAACAGCTtaagaaaaatgaaattaaCTGCTTTCACCTGCCTTACATTTCAAGACCATCATCAATGGAAGAGCTACAGACTAGCTACAGCCTATTACAACAATTTTGTAgaagcacttttttaaattagctTAAATTAGCTAATCACACCActtgcaaataaaacaatagaatttgaaaaacagaaaatcactGTATGATGTAGACTTATCATTCAAATAGGCCATGTTCATACAAACAGATCCATTACTCAAAATACAAATACGACAATGCTCTAAAGCAATGTTCCTCAGCTCCCAGTGAAGCCTAGTTTCAACTATTCCCTCCCTCACTACACTTTGTCCAACACTTTTTGGGATAAAGTCCAAGGTGCGTTGAGTAAGTGAATAAATGGATCTCTAGTATTGTATGTCATAAAGTGCAGGGTAAATAAAACACCACTCTGTAACTCAACACCATTTAGTTTAGCCCAGTACCAAGTCTACTgctccaaaataaaaattacaaactATGCACATATTACATAAACCAGGGACTCTATGGTATAAATCACTACAGCCCCGGTGTAGGGCTTTAGTAAGTGAAATGGCAGGGGCTAAAGGCAAGGCAGTATAGAGGTAAAATAAGACCCAAAAACAACTTTCTGATTCAGGTTTGATCACAAATATTTCAAGCATCTTAGTCAAACAAGTGAACATTAAAGtatgttgtcttttttttccaaggAAGGCAAATCATAAAACCTTCATCCCATAGCTGGGACAAATTACAGAAAGTCCCCAGAGTCAACTTCAGCCATGTAAGCATCAAGCTGTGCATCCAGGTGGCTCTTGGTCATAGACATATAGTCATCCAGTTGTTCATCCAGCTCCTCTCGAGTAGGAACAGGTCGACTCTCTGCCCAGCGTCTTCCTCCACCCCTGCCATGGCCTACAAACATCCCCTCTCATAGATCCTCTTACTCCTCTGTTTTGCATCACTCTTGGTTCACTTACAGACGCTCCCTGGTACTGGCGATTTAAGCCCTGATGTGTCACAAAACCAGACACTACACTTTGCAGTCCTCTCACacATCTCACTGATAATGTTCCTCTAAGTGACGGTCCTCTTCCTCTGAGCTTGCCCGAGCGTCTGGCCACCCCATGCAATCCTCCTCTCATCAGGGGCCTACTCAGCCTTGCCTTAATGTTCCCCCTACCTAGACGATGCTTCAGACTCTGTgcattgaagaaaaaaaatagacacaGTAATATCCTCCGTATCTAAGCAGGAGGAACACATGGATAAACACAGCAAGCCCTAGAGATATAGCTCTTTCTGAAGAAACAGCTCAATCATTGGTCAAAGGTTCACAATGTTCACACAGGATGAACACGTCGTCCGTACTGATAGTTATGCCTATAATAAGTCAtgcttcagtgtttttttcttatacAAGTCATGAGTATTACAATTACACCTCAAAACATAGTATAGAAACATTAAAGCTAATAACATCAAATCACAACATAATGTTCCAATTCTTATTGGAAAgacaggaatgtttttttttgttgaactaCAAGTGAGATGCACCGGTATATTACGCAGGGCAGACAGTACTGAAGGCCAATTGGCCATCTGCTGAGCCAGTCGCTGGTTCTTCAGTGAAGCGGTTTGAAGCTGCTGCACATTGCCTGAGAGGTCTATTAGCTCTGGCTTCTTCCCTATGCGGTCATTAAGAGACATCAATGATGTGCTTTTCAGGTAGATCTCAGGGGAAGGAGAAGTCATCTTCAAAACTCGACAGTGTAATAGACAAAAATGAACTGGAAAATACATGAGAGGCTGGATTACAATAAGGCTGTTTACTACCTTACAGGGTAGTTTCTGTGACGGGGAAGATATGTAATCTATGACTTGTCTTAAACTTAATCAATTTCTGGGAAACCAACCCCAAAATGAGTTCACCAAACATGGGCCAAAGTGTAAGTcacattctattctatttaaatGACTAGTTGCTAGGATGTTATGTTGCTCTTTGCATATATTACAATTAGGATTTTCTATTTTCACTTCAGTGAATTACCTGCAGCTTTCCATAGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121417 True 2864 lncRNA 0.38 4 12286434 12290091

Neighbor

gene id symbol gene type direction distance location
LOC111193332 NA coding upstream 88001 12196386 ~ 12198433 (+)
LOC103025286 NA coding upstream 138955 12141688 ~ 12147479 (+)
LOC111193331 NA coding upstream 225898 12054190 ~ 12060536 (+)
LOC103037827 ndrg1 coding upstream 254005 12024708 ~ 12032429 (+)
LOC103029811 LOC108436544 coding upstream 349099 11931967 ~ 11937335 (+)
LOC103022359 LOC103022359,LOC108436572,LOC108267606,LOC107549232,LOC107741768,LOC107597968 coding downstream 3094 12293185 ~ 12308174 (+)
LOC103021300 LOC108436571,LOC108267614 coding downstream 22645 12312736 ~ 12333793 (+)
LOC103037179 LOC103037179 coding downstream 49850 12339941 ~ 12360647 (+)
dcst1 NA coding downstream 97812 12387903 ~ 12424217 (+)
adam15 adam15,LOC107717790 coding downstream 135548 12425639 ~ 12472030 (+)
G90227 NA non-coding upstream 87637 12198521 ~ 12198797 (+)
G90188 NA non-coding upstream 176963 12107808 ~ 12109471 (+)
G90159 NA non-coding upstream 268092 11992754 ~ 12018342 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding upstream 306125 11970116 ~ 11980309 (+)
G90117 NA non-coding upstream 517163 11768358 ~ 11769271 (+)
G90321 NA non-coding downstream 78752 12368843 ~ 12372236 (+)
G90370 NA non-coding downstream 218791 12508882 ~ 12509377 (+)
LOC111193294 NA non-coding downstream 239949 12530040 ~ 12530995 (+)
G90382 NA non-coding downstream 311411 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 437274 12727365 ~ 12741544 (+)
G90199 cct3 other upstream 129572 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 147572 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1379262 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1495306 10780102 ~ 10791128 (+)
G89806 NA other upstream 1597614 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 242210 12532301 ~ 12552772 (+)
npy npy other downstream 654695 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1981904 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2355707 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2372566 14662657 ~ 14773367 (+)

Expression


Co-expression Network