LOC111193332


Basic Information

Item Value
gene id LOC111193332
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12196386 ~ 12198433 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673570.1
CACCTCCATCCAACATCTGGACATGCCCGGACTGAGCATCTGCAGACCCGCAGTTCTGGTGGCTCCCTGCGCGGGGAGTTCAGCAGCTGCTAAACGAGAGAAGTCCCTCCAGGCTCCTCCAGGTCTCCAGGACGCCCAGCCGGTCGCTTCGCGGCACGTTTCACTGCGGGAGATGGTGCTGACTCCAGCCCGCGTGCCTCCCTTCACCATCCCGCCGCTGTGCGCGGTGACTCGGCCCGGGCGCTGCTCTGCGGGGGGCGGCTCTCGGCGCAACACGCTGCCGGCCTCAGCTCACTCTCTCCGGTATAACAGCCGCTGCTGCTGCCCGTTCTCAGCGCTCAGCCTCACGGACCTGGAGCCTCACTCATGCGCTCTGTCAGACCCGGGCACCAGAGCCGCGATGTCTCTGCCCCACCTGGCCAAAATCACCACTCCGTACGGCTTCATCACCCTGGGGGAGAGCCCCTGCGTCCGCCGCCGAGAGTCGCTGTTCTTCCAGGAGAGCCAGACACAgcctggagcttcacagcagcagcagcagTGTGTGAAATCTAAGAGTGAGTCTTCCTTGCAGTCCTGCAGTGTAGCAGCATGCTGTATTTCATCTCTCCAACAAGAAAATTACCTCTCTACTTCACGTGACTGTTCAAAGCCTCACAAGTGCACACACCGTTCCAGCAGTTTTTCAACGAGGAAAGAAAAACTGAAGTATTTCCTGAAGAACCGCTTCAAAGCATAAGAGCCAATTCACTTCCAGAAACTTCCCTGAAATGACATTCACACTAAAGAAGTCCCCCTGATAATTACAGAGATATACTCCATCAAGAAGAAAAAGGCCCTTGAAAAAGCAGAATGAGCTGATAGTGAGTGGAAAATTAAATGATGAGACTTGGAGTGAAGGTTAACCAGTTCATGTATCAAAATACACATTGAATTACTGTTGGTTGTGATATGTTATTATAAGGAGGCacctactatatatatatatattatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673570.1 True 1000 mRNA 0.53 2 12196386 12198433

Neighbor

gene id symbol gene type direction distance location
LOC103025286 NA coding upstream 48907 12141688 ~ 12147479 (+)
LOC111193331 NA coding upstream 135850 12054190 ~ 12060536 (+)
LOC103037827 ndrg1 coding upstream 163957 12024708 ~ 12032429 (+)
LOC103029811 LOC108436544 coding upstream 259051 11931967 ~ 11937335 (+)
LOC103035108 LOC108410775 coding upstream 850087 11339080 ~ 11346299 (+)
LOC103022359 LOC103022359,LOC108436572,LOC108267606,LOC107549232,LOC107741768,LOC107597968 coding downstream 94752 12293185 ~ 12308174 (+)
LOC103021300 LOC108436571,LOC108267614 coding downstream 114303 12312736 ~ 12333793 (+)
LOC103037179 LOC103037179 coding downstream 141508 12339941 ~ 12360647 (+)
dcst1 NA coding downstream 189470 12387903 ~ 12424217 (+)
adam15 adam15,LOC107717790 coding downstream 227206 12425639 ~ 12472030 (+)
G90188 NA non-coding upstream 86915 12107808 ~ 12109471 (+)
G90159 NA non-coding upstream 178044 11992754 ~ 12018342 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding upstream 216077 11970116 ~ 11980309 (+)
G90117 NA non-coding upstream 427115 11768358 ~ 11769271 (+)
G89995 NA non-coding upstream 619034 11548096 ~ 11577352 (+)
G90227 NA non-coding downstream 88 12198521 ~ 12198797 (+)
G90245 NA non-coding downstream 88001 12286434 ~ 12290091 (+)
G90321 NA non-coding downstream 170410 12368843 ~ 12372236 (+)
G90370 NA non-coding downstream 310449 12508882 ~ 12509377 (+)
LOC111193294 NA non-coding downstream 331607 12530040 ~ 12530995 (+)
G90199 cct3 other upstream 39524 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 57524 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1289214 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1405258 10780102 ~ 10791128 (+)
G89806 NA other upstream 1507566 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 333868 12532301 ~ 12552772 (+)
npy npy other downstream 746353 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 2073562 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2447365 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2464224 14662657 ~ 14773367 (+)

Expression


Co-expression Network