G90159


Basic Information

Item Value
gene id G90159
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11992754 ~ 12018342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121320
GAGTGGCATTGGTTGGGTTGTGTGTGATCAGGAAGCGCATGTTTTTGTAACAGACTTCAACAGGGGCCGGGCGATTCATCCTGGCCATTCCCAAGAGCCAGCCGCACTGCGAGCTGAGCCAGTGTCCTCTGGGTAAACACACAACACTACTACAAGTCCTGCTGTATCTGCCTCGCCAGCAGGGTTACAGTAACTGTGCTGTCACAGTGCAAGGCCTCAGGAGGTTGCGGAGTCTTCTGCTACGTCTCAATGGAAACACAATTAGTTGCCTGGTTCTTTCAGCCTTCAGCGTCCCAGAGAACCAGACACGAGCTGAGCTGAAACGGGCGAATGGGCGATTAGTCGGGTGGAGCGCGGTCCGATAGCCCTTGGCCCGGACGCCTGCTAACCCATCTGGTGTGTATGGACCGGTCTTCAGTCAGTGGGACCAGAGTGAGGGAAGGACGAGGTAGGAGAAAGGTCCTCTGAGCATTCAGCAGTCAGACGCAGGCGGAACCACCTGAGCTCAGGCGTCGCGATGTTGGGCGTGGCAGTAGTCACCGCTGCCCTGCAAGAACTCCATCAACAAACAGGAGGCTGAGGAACAGAGCTCCGGTACTCACGGGTCTCCGCGGCCGGTCCGCTACCGAACTCCGTCCATGTGTTTCAGGTCCAGTGTGTCATTTCTCCCTCCGCGCGGTCTCCATGGGGACGCAGCGTCACCATCAGCTCCGGCTCGGAACCGG

Function

GO: NA

KEGG:

id description
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU121320 True 725 lncRNA 0.58 2 11992754 12018342

Neighbor

gene id symbol gene type direction distance location
LOC103029811 LOC108436544 coding upstream 55419 11931967 ~ 11937335 (+)
LOC103035108 LOC108410775 coding upstream 646455 11339080 ~ 11346299 (+)
mc2r LOC108410771,LOC108267950 coding upstream 677382 11314243 ~ 11315372 (+)
LOC103036059 pear1,LOC108410780 coding upstream 739587 11175708 ~ 11253167 (+)
LOC103037177 NA coding upstream 835768 11147464 ~ 11156986 (+)
LOC103037827 ndrg1 coding downstream 6366 12024708 ~ 12032429 (+)
LOC111193331 NA coding downstream 35848 12054190 ~ 12060536 (+)
LOC103025286 NA coding downstream 123346 12141688 ~ 12147479 (+)
LOC111193332 NA coding downstream 178044 12196386 ~ 12198433 (+)
LOC103022359 LOC103022359,LOC108436572,LOC108267606,LOC107549232,LOC107741768,LOC107597968 coding downstream 274843 12293185 ~ 12308174 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding upstream 12445 11970116 ~ 11980309 (+)
G90117 NA non-coding upstream 223483 11768358 ~ 11769271 (+)
G89995 NA non-coding upstream 415402 11548096 ~ 11577352 (+)
G89994 NA non-coding upstream 447399 11544853 ~ 11545355 (+)
G89993 NA non-coding upstream 453212 11522772 ~ 11539542 (+)
G90188 NA non-coding downstream 89466 12107808 ~ 12109471 (+)
G90227 NA non-coding downstream 180179 12198521 ~ 12198797 (+)
G90245 NA non-coding downstream 268092 12286434 ~ 12290091 (+)
G90321 NA non-coding downstream 350501 12368843 ~ 12372236 (+)
G90370 NA non-coding downstream 490540 12508882 ~ 12509377 (+)
LOC111193328 NA other upstream 1085582 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1201626 10780102 ~ 10791128 (+)
G89806 NA other upstream 1303934 10688266 ~ 10688820 (+)
G89805 NA other upstream 1306698 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 1991840 9975197 ~ 10000914 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 116937 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 136555 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 513959 12532301 ~ 12552772 (+)
npy npy other downstream 926444 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 2253653 14271995 ~ 14274698 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010804 ptp4a3b coding NC_007127.7 CM002900.2 31453980 ~ 31505802 (-)