LOC103035108 (LOC108410775)


Basic Information

Item Value
gene id LOC103035108
gene name LOC108410775
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11339080 ~ 11346299 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249728.3
CGGGCAAAGTCCATGTGGAGCTAAGTGGAAAAAGTTTACATGCCTGGAGCAGCGAGAGACATGGCGCGCGGCGCGGACAGCAGGCTTCGGTAGAAACACCGTCTGAATGTTTTGTAGGTGAGTGACGGAGAGCTAGAGGAGCAGAGATGCAGCGTGTGCTGTGCCTTGCAGCTATCCAGCTGCGCTCAGGCTGCCTGGACCTGAACATTAGGGAGCTGCCCGTCAGTGGACAGGTCATACGTATAAAGTGTTTTACTCCTCGCTGCTTTAGCTCCTCTGCCACTGCTCGGGCCAGTGGGTCCCACAAGACACCACCTGAAGCAAAATCTGATGTGCCGTCAGACACTACCCAACAACATGAGGTCGATCCTCTGCAGGACAAGTCCATTAGCCTCTACCAGCGGTTTAAGAAGACTTTTAAGCAGTATGGGAAAGTCATGGTGCCTGTACACCTTGTCACCTCCTCTGTGTGGTTTGGGGCTTTTTACTACTCTGCAATGAAagggGTGAACTTGGTCCCATTTTTGGAGTTCATCGGGTTGCCTGACAAAGTGGTGGGCATTCTGCGAGACTCGCAGGGTGGATATGCGCTAACAGCCTACGCCATGTACAAGCTTGCTACCCCAGCCAGGTACACAGTGACTCTGGGTGGCACATCTCTGTCAGTGCAGTACCTCCGGAAGCACGGCTACTTATCCACCCCCCCGCCGGTTAAAGACTTTCTGCAAGACAAAATGGAGGAGACCAGAGAGAGATTCTCTGAAAAGATGGAGGAGACGAAGGGGCGATTTTCAGAGAAAATGGAAGAAACCAAAGGGCTCTTCTCAGGGCGAATGGAAGAGACTAAGGAGCGCTTCACTGAAAAAATGGAAGAGACGAAAGACAAGCTCTCTGAGAGACTGCATGAGACGAAAGACAAAGTGTCTTTCCGGAAGAAAATGGATTAACGGTGGTGTGCTCACAGTGGTGTGACCAGGCAGCTGCTGAGAGATGAGGAAAATGCACAGGGTTGTACCTTTCTAGGAATTTAATCACTTGTATCCACTGAGTTCTGATCCTGAATCCTCATTTAGTTTAAAGGCATCTGTGTCTTCAAATGATTTAAAAGAACTAAAAACATCAGTAAATATTAATGGTCTGGCATACAGACAAGCTTGTTTACACTTAGAACTTGATTCAGTTTAAATGGTGAATCTGCTGGAAAAGAGTCCGCTTTAACACAGTTACATGGTGAATAgcatagtggataacaccagCAGAAGAGAGTTTAGTTCCTTGGCTGGGGAGAACACATCACACTACACAAatgagtccttgggcaagaacACTTATAGGGATGGCCGGCAACAAACATGTTTGgctaaaacaaaaagtaaacaaaattgaaTATTTGGCtgaagatttaaaaactgaaaaccaaacatgttttatctttcattttgccactttttccaGCAAAACTAGTCATTCTTGGGTCATTCTCTGACCCTTTAAAATACGTTTACACAGCTTATGTTTTCTgcatttacaaaattacaaatttacaaaactCCACACTGGTGGCAATTTTGATTGCTCATCAAGAGATTGTCTGGCACAAAgtgctttttttgccattttcaatTGAATAATTGTGATTTGTTCAAAATGTTCACTacatcccaatttttttttattttggcattATTTACCTACTTCTTTAACATGAATCAAATATATGTTGCTCTTGATTTGAGCATCAGCCAAATGCCatacatgtaaatgtaaacatatCACAACCTTTATATTTAGAACCTGTATTACATATTGGTTATGTATCAAGATAATTTTCTGTCAATACGATACAATTCCGATATCGATATGAGCAGTATAAAACACtgttagagctgggtgatatggtaaaaatataaatatttagacattttaacaaaacacagtatttatcaTATTTGGTCGGTGTTctttatatattgatattgtcgataaaataagaaaatatatcacgataccataaaatattgatgTATCGTCCAGCTCTAGTCTGACAATAGCAAATTTGCTGGGTATTAGAAACATGTCTGCCACTTTTCATACAGCATCTactggtaattttttttaagctgtgtggAAAGTAATTGTTTTGAAAGTTATATTTAACCTGTCTCACTGGTCAGATTGATTTGAAGCAGGGCCTTGTTCTGAATGTAGTATTATGCAGCTCATATGACACTTGAAATACTGATTTTTATTGTGATTTCAAAAAACAGAACTTTTGGTTTTAGTACATTAAGTGAGAAAGTTGTATATTTCTACATGACAGCCAAGtcagtatattttaataataatttctctACATACAATATTGTGTATCTTACTGTTTTTAGTTAATAGCTGAATCTGAAGTATGTGTAAAATGAAAGCCATAAAACGATATTCTTATGCAAGATGGAGCAACCATATTTTCTTGACAGAAAAGAATGTGTGATTTGTGCTACCTTTTAAGTGAACATGTGGACTGCATTTTGTGAGAATTCAAATGTTTGTATAGACCGTGTTAAAAAGAATAAACTGCAGCGTTTGTcatgaca

Function

NR:

description
PREDICTED: uncharacterized protein C18orf19 homolog B-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249728.3 True 2588 mRNA 0.40 4 11339080 11346299

Neighbor

gene id symbol gene type direction distance location
mc2r LOC108410771,LOC108267950 coding upstream 23708 11314243 ~ 11315372 (+)
LOC103036059 pear1,LOC108410780 coding upstream 85913 11175708 ~ 11253167 (+)
LOC103037177 NA coding upstream 182094 11147464 ~ 11156986 (+)
mef2d mef2d,LOC107597970,LOC107549240,LOC107717782,LOC107663114,LOC107741762 coding upstream 218419 11049832 ~ 11120661 (+)
rhbg rhbg,LOC108441913,LOC102214426,LOC102292549,LOC100691306,LOC101476914 coding upstream 354164 10965401 ~ 10984916 (+)
LOC103029811 LOC108436544 coding downstream 585668 11931967 ~ 11937335 (+)
LOC103037827 ndrg1 coding downstream 678409 12024708 ~ 12032429 (+)
LOC111193331 NA coding downstream 707891 12054190 ~ 12060536 (+)
LOC103025286 NA coding downstream 795389 12141688 ~ 12147479 (+)
LOC111193332 NA coding downstream 850087 12196386 ~ 12198433 (+)
G89962 NA non-coding upstream 1859 11333518 ~ 11337221 (+)
G89946 NA non-coding upstream 80633 11214952 ~ 11258447 (+)
G89924 NA non-coding upstream 273868 11063652 ~ 11065212 (+)
G89857 NA non-coding upstream 452479 10884711 ~ 10886601 (+)
G89847 NA non-coding upstream 473067 10818772 ~ 10866013 (+)
G89971 LOC106593020,LOC106606028 non-coding downstream 93236 11439535 ~ 11440371 (+)
LOC111193330 NA non-coding downstream 99170 11445469 ~ 11448779 (+)
G89993 NA non-coding downstream 176473 11522772 ~ 11539542 (+)
G89994 NA non-coding downstream 198554 11544853 ~ 11545355 (+)
G89995 NA non-coding downstream 201797 11548096 ~ 11577352 (+)
LOC111193328 NA other upstream 431908 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 547952 10780102 ~ 10791128 (+)
G89806 NA other upstream 650260 10688266 ~ 10688820 (+)
G89805 NA other upstream 653024 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 1338166 9975197 ~ 10000914 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 788980 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 808598 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 1186002 12532301 ~ 12552772 (+)
npy npy other downstream 1598487 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 2925696 14271995 ~ 14274698 (+)

Expression


Co-expression Network