G89946


Basic Information

Item Value
gene id G89946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11214952 ~ 11258447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121025
TtttaacaaaaaaaAATCTTTGGAttttacaaaacaataaaacaaaaatgtttctaTGAAGTGTTTGCTCTTCTTTATTCCGTTCTTATCACTCGTCCAATCTATCAAATGCTTTTGTTTCCAAAAGTGGTATCAGTGGTGCTGATTTGCCTCAACCCAAAGGTAAAGATCACAGTTGCTCTTAATTCTGTTTGTAAATGCAGAAAATGTCGCTCTCCTGCTCAACCTGATCAAATATAAAGCATCCCACAAGCAGTGCAcaaaaaggaacaaaaagaaGCTTCAGCCAAGCTAGAAGAAGTGTCCAGTTCACCTGCTGTTACAGTATTAAAGACAGATAGATCATAGTTTGCATAAAGCTGTGTTTAGACTGGcaaaatcaaatcagatttttggatTATTAAGATGGTATCCAGATTAGTTACCTGAATAAATCCAGATCCAcaacaaacaatgcaaagttACTAGTATATTTGTTTGTGATGTTTAGACACACAAATCCAATCGCAAATAACAGTGCAGACAGTCATTTGCAAGAGCCTtccaaaccaacaccacccatcTACCATAGGagtccaacaaacacccttaaagaaataaattcagaattcatttaattccatttattttttacctacacaaaatctttattatatatctatatattcattataaatAACGAATGTTGCATcttcaaaattaaataattacataaatcagCCCCTCTGGTCTGGAAACTTTCAAAATCAATCAAACCTCAATTAAATCTTTCATATATTCCTCTCCTAGGATTTTaatcaacattcattttaaatttttttccctCAATATCAGAACACTATCACTGGAAAACTGTACCATCACTTAAAGCTGTAAAGgcactaaaaaaaaagcttcatgaTTTCATGATCACATGTTGAACAGTTGGCCTCTACTGTGTATTGTGGAAATATTTGGTACAAAGTGTTGAAATATGGCTTTACAGTACATTCAAATACTCTCCCAATCCTATTGGAGTAAACGTGCAGACAGGGATACCGTGATGTGCGCGTTGAGTTGTGACAGCATCTGATAGGAAAGTCTAAGGCGGATCCTTGTCTCTGGATAAGTGTTCAAGTGCTCTGTTAACCTCTCTCCCTGAACATGGCTTTACAAAAAGCAGCAGTCCAGCCCACATGCAAGACTAAcatacaatactgtatatatacacaaaccCTATATAAGCACCCAAGCTGCCTCCAAGCCCTCAGCCATACAAAAGCTATTCATCTACCCCGCAAATTACTACATACAAAATAAGACTGATTTAGGTATAaagtatgaaaaataaaaaaatctcaatggctagaagttagaaaaaaatgtatccCAGGTTACACGGTGCAAAAGGCACATCCTGAACTGGGCAGACATCACGGCCATCCCTTTACTTTACATGATGGAGCAGTTCTCTGGTTTAGGTCCTC
>TU121026
attttttatttctttttttttaatgaaaggcACTGTTTATACCAACATTTTCAGTACaggtctttatttaaaaaaagaaaacaaaacaaagaacaaaacaaaaaacctcTATGTAAGCAATGCAGATCTAAACTACTACATACGAAAAAGCTTTTTTAACTACATGAACAACTTCAGACTTCCATGGTCTTGAGGGGGAAACAAAATGAAGCAATAATGCATTTACTAAACCGCCCCCatacttgctttttttttttttttaccaaagaaAATCTTTGGAttttacaaaacaataaaacaaaaatgtttctaTGAAGTGTTTGCTCTTCTTTATTCCGTTCTTATCACTCGTCCAATCTATCAAATGCTTTTGTTTCCAAAAGTGGTATCAGTGGTGCTGATTTGCCTCAACCCAAAGGTAAAGATCACAGTTGCTCTTAATTCTGTTTGTAAATGCAGAAAATGTCGCTCTCCTGCTCAACCTGATCAAATATAAAGCATCCCACAAGCAGTGCAcaaaaaggaacaaaaagaaGCTTCAGCCAAGCTAGAAGAAGTGTCCAGTTCACCTGCTGTTACAGTATTAAAGACAGATAGATCATAGTTTGCATAAAGCTGTGTTTAGACTGGcaaaatcaaatcagatttttggatTATTAAGATGGTATCCAGATTAGTTACCTGAATAAATCCAGATCCAcaacaaacaatgcaaagttACTAGTATATTTGTTTGTGATGTTTAGACACACAAATCCAATCGCAAATAACAGTGCAGACAGTCATTTGCAAGAGCCTtccaaaccaacaccacccatcTACCATAGGagtccaacaaacacccttaaagaaataaattcagaattcatttaattccatttattttttacctacacaaaatctttattatatatctatatattcattataaatAACGAATGTTGCATcttcaaaattaaataattacataaatcagCCCCTCTGGTCTGGAAACTTTCAAAATCAATCAAACCTCAATTAAATCTTTCATATATTCCTCTCCTAGGATTTTaatcaacattcattttaaatttttttccctCAATATCAGAACACTATCACTGGAAAACTGTACCATCACTTAAAGCTGTAAAGgcactaaaaaaaaagcttcatgaTTTCATGATCACATGTTGAACAGTTGGCCTCTACTGTGTATTGTGGAAATATTTGGTACAAAGTGTTGAAATATGGCTTTACAGTACATTCAAATACTCTCCCAATCCTATTGGAGTAAACGTGCAGACAGGGATACCGTGATGTGCGCGTTGAGTTGTGACAGCATCTGATAGGAAAGTCTAAGGCGGATCCTTGTCTCTGGATAAGTGTTCAAGTGCTCTGTTAACCTCTCTCCCTGAACATGGCTTTACAAAAAGCAGCAGTCCAGCCCACATGCAAGACTAAcatacaatactgtatatatacacaaaccCTATATAAGCACCCAAGCTGCCTCCAAGCCCTCAGCCATACAAAAGCTATTCATCTACCCCGCAAATTACTACATACAAAATAAGACTGATTTAGGTATAaagtatgaaaaataaaaaaatctcaatggctagaagttagaaaaaaatgtatccCAGGTTACACGGTGCAAAAGGCACATCCTGAACTGGGCAGACATCACGGCCATCCCTTTACTTTACATGATGGAGCAGTTCTCTGGTTTAGGTCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121025 False 1466 lncRNA 0.36 3 11214952 11258447
TU121026 True 1722 lncRNA 0.35 2 11256399 11258447

Neighbor

gene id symbol gene type direction distance location
LOC103037177 NA coding upstream 57966 11147464 ~ 11156986 (+)
mef2d mef2d,LOC107597970,LOC107549240,LOC107717782,LOC107663114,LOC107741762 coding upstream 94291 11049832 ~ 11120661 (+)
rhbg rhbg,LOC108441913,LOC102214426,LOC102292549,LOC100691306,LOC101476914 coding upstream 230036 10965401 ~ 10984916 (+)
bcan NA coding upstream 275712 10917306 ~ 10939240 (+)
isg20l2 NA coding upstream 303746 10907963 ~ 10911206 (+)
mc2r LOC108410771,LOC108267950 coding downstream 55796 11314243 ~ 11315372 (+)
LOC103035108 LOC108410775 coding downstream 80633 11339080 ~ 11346299 (+)
LOC103029811 LOC108436544 coding downstream 673520 11931967 ~ 11937335 (+)
LOC103037827 ndrg1 coding downstream 766261 12024708 ~ 12032429 (+)
LOC111193331 NA coding downstream 795743 12054190 ~ 12060536 (+)
G89924 NA non-coding upstream 149740 11063652 ~ 11065212 (+)
G89857 NA non-coding upstream 328351 10884711 ~ 10886601 (+)
G89847 NA non-coding upstream 348939 10818772 ~ 10866013 (+)
G89833 LOC103044830,LOC108441923 non-coding upstream 422293 10791284 ~ 10792659 (+)
G89826 NA non-coding upstream 487654 10725327 ~ 10727298 (+)
G89962 NA non-coding downstream 75071 11333518 ~ 11337221 (+)
G89971 LOC106593020,LOC106606028 non-coding downstream 181088 11439535 ~ 11440371 (+)
LOC111193330 NA non-coding downstream 187022 11445469 ~ 11448779 (+)
G89993 NA non-coding downstream 264325 11522772 ~ 11539542 (+)
G89994 NA non-coding downstream 286406 11544853 ~ 11545355 (+)
LOC111193328 NA other upstream 307780 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 423824 10780102 ~ 10791128 (+)
G89806 NA other upstream 526132 10688266 ~ 10688820 (+)
G89805 NA other upstream 528896 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 1214038 9975197 ~ 10000914 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 876832 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 896450 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 1273854 12532301 ~ 12552772 (+)
npy npy other downstream 1686339 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 3013548 14271995 ~ 14274698 (+)

Expression


Co-expression Network