G89993


Basic Information

Item Value
gene id G89993
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11522772 ~ 11539542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121091
GATCCTTGTAATATCGTGCAGGTTTCATCAGTGGTTATTAAACCGCGGCATTAACGTTTCACAGACGCTTTAGCCACTTTTACTCCGCAGCGTTTCGCCCTCAGTGGTGGTCCTGTGTTAGTCCCGTTCTTTATCCGTGTGTTGTTTCCTTTAAAAGCTCAGTGGGGTCTGTGTCTCTCGCCTCCACAGCCGGAatgctccctctccctctcttgtttCCCACCAATGCAGCGCTGCATCCTGCAATCACGGCTCCAACATGGCTGACGCAGAGTGAGCGGGCCCAGCGCTGCCCCTCTGCCTATAGGTGACCTTAAGTGGACAGACAGCACTTTCTCTTCACATCCTGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121091 True 353 lncRNA 0.53 2 11522772 11539542

Neighbor

gene id symbol gene type direction distance location
LOC103035108 LOC108410775 coding upstream 176473 11339080 ~ 11346299 (+)
mc2r LOC108410771,LOC108267950 coding upstream 207400 11314243 ~ 11315372 (+)
LOC103036059 pear1,LOC108410780 coding upstream 269605 11175708 ~ 11253167 (+)
LOC103037177 NA coding upstream 365786 11147464 ~ 11156986 (+)
mef2d mef2d,LOC107597970,LOC107549240,LOC107717782,LOC107663114,LOC107741762 coding upstream 402111 11049832 ~ 11120661 (+)
LOC103029811 LOC108436544 coding downstream 392425 11931967 ~ 11937335 (+)
LOC103037827 ndrg1 coding downstream 485166 12024708 ~ 12032429 (+)
LOC111193331 NA coding downstream 514648 12054190 ~ 12060536 (+)
LOC103025286 NA coding downstream 602146 12141688 ~ 12147479 (+)
LOC111193332 NA coding downstream 656844 12196386 ~ 12198433 (+)
LOC111193330 NA non-coding upstream 73993 11445469 ~ 11448779 (+)
G89971 LOC106593020,LOC106606028 non-coding upstream 82401 11439535 ~ 11440371 (+)
G89962 NA non-coding upstream 185551 11333518 ~ 11337221 (+)
G89946 NA non-coding upstream 264325 11214952 ~ 11258447 (+)
G89924 NA non-coding upstream 457560 11063652 ~ 11065212 (+)
G89994 NA non-coding downstream 5311 11544853 ~ 11545355 (+)
G89995 NA non-coding downstream 8554 11548096 ~ 11577352 (+)
G90117 NA non-coding downstream 228816 11768358 ~ 11769271 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding downstream 430574 11970116 ~ 11980309 (+)
G90159 NA non-coding downstream 453212 11992754 ~ 12018342 (+)
LOC111193328 NA other upstream 615600 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 731644 10780102 ~ 10791128 (+)
G89806 NA other upstream 833952 10688266 ~ 10688820 (+)
G89805 NA other upstream 836716 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 1521858 9975197 ~ 10000914 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 595737 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 615355 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 992759 12532301 ~ 12552772 (+)
npy npy other downstream 1405244 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 2732453 14271995 ~ 14274698 (+)

Expression


Co-expression Network