G89994


Basic Information

Item Value
gene id G89994
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11544853 ~ 11545355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121092
gattaaaaaaaacagtaatagtttactaaatacagaaaagcttaaagctcaccttccgcgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacataggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggtggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacgcctaaaacagtccattaaaaaagagctatacagagacacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121092 True 503 lncRNA 0.47 1 11544853 11545355

Neighbor

gene id symbol gene type direction distance location
LOC103035108 LOC108410775 coding upstream 198554 11339080 ~ 11346299 (+)
mc2r LOC108410771,LOC108267950 coding upstream 229481 11314243 ~ 11315372 (+)
LOC103036059 pear1,LOC108410780 coding upstream 291686 11175708 ~ 11253167 (+)
LOC103037177 NA coding upstream 387867 11147464 ~ 11156986 (+)
mef2d mef2d,LOC107597970,LOC107549240,LOC107717782,LOC107663114,LOC107741762 coding upstream 424192 11049832 ~ 11120661 (+)
LOC103029811 LOC108436544 coding downstream 386612 11931967 ~ 11937335 (+)
LOC103037827 ndrg1 coding downstream 479353 12024708 ~ 12032429 (+)
LOC111193331 NA coding downstream 508835 12054190 ~ 12060536 (+)
LOC103025286 NA coding downstream 596333 12141688 ~ 12147479 (+)
LOC111193332 NA coding downstream 651031 12196386 ~ 12198433 (+)
G89993 NA non-coding upstream 5311 11522772 ~ 11539542 (+)
LOC111193330 NA non-coding upstream 96074 11445469 ~ 11448779 (+)
G89971 LOC106593020,LOC106606028 non-coding upstream 104482 11439535 ~ 11440371 (+)
G89962 NA non-coding upstream 207632 11333518 ~ 11337221 (+)
G89946 NA non-coding upstream 286406 11214952 ~ 11258447 (+)
G89995 NA non-coding downstream 2741 11548096 ~ 11577352 (+)
G90117 NA non-coding downstream 223003 11768358 ~ 11769271 (+)
G90139 LOC103028340,LOC108267736,LOC105910791,LOC101063201,LOC102233830,LOC107714616,LOC107704901,LOC107102542,LOC103371668 non-coding downstream 424761 11970116 ~ 11980309 (+)
G90159 NA non-coding downstream 447399 11992754 ~ 12018342 (+)
G90188 NA non-coding downstream 562453 12107808 ~ 12109471 (+)
LOC111193328 NA other upstream 637681 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 753725 10780102 ~ 10791128 (+)
G89806 NA other upstream 856033 10688266 ~ 10688820 (+)
G89805 NA other upstream 858797 10685657 ~ 10686056 (+)
iffo1 iffo1 other upstream 1543939 9975197 ~ 10000914 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 589924 12135279 ~ 12138862 (+)
G90199 cct3 other downstream 609542 12154897 ~ 12156862 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 986946 12532301 ~ 12552772 (+)
npy npy other downstream 1399431 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 2726640 14271995 ~ 14274698 (+)

Expression


Co-expression Network