LOC111193294


Basic Information

Item Value
gene id LOC111193294
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12530040 ~ 12530995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650412.1
TTCAGCGGAATATCAGTGCTTGTTTCCGATGGCTGTTCTTGGAGGCCTTTCACTTCTTCTGATCATCTTAACAGTCACATTAATGTGCATCTGGCAGAGGACAGGTATAATAAAGCATCAGAAGAACAACAGTGCATCTGAAGAACATCAGCAATCTTCAAGTGAGGTGCAGTATGCAGCCCTGAGGTTTGGAACTAGAAGGTAGACTGGCATCACAAGTTCCTGAGTGTTAAATGCTTCTGTAATTACTTTAAGTTAAGCAAAATTCTGAATgctatgagtttttttttttcatcatgttGTTTCAAGCAGTCTCCTTGTGCAGTTTTTAATTTAGGCCTTAatgaaaaattttttttaaagaaaagtacttttaaaagttTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650412.1 True 385 lncRNA 0.37 3 12530040 12530995

Neighbor

gene id symbol gene type direction distance location
nudt17 nudt17 coding upstream 17105 12505041 ~ 12512935 (+)
LOC103045643 si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177 coding upstream 25912 12492664 ~ 12504128 (+)
LOC103029364 NA coding upstream 39654 12483951 ~ 12490386 (+)
LOC103029682 NA coding upstream 47478 12473174 ~ 12482562 (+)
adam15 adam15,LOC107717790 coding upstream 58010 12425639 ~ 12472030 (+)
thbs3 thbs3,thbs3a,LOC107666739,LOC107719129,LOC105896172,LOC106605431 coding downstream 26015 12557010 ~ 12585238 (+)
hfe2 hfe2 coding downstream 60063 12591058 ~ 12599849 (+)
LOC103036326 txnip,LOC103036326 coding downstream 76293 12607288 ~ 12610047 (+)
ankrd34a ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270 coding downstream 110426 12641421 ~ 12665395 (+)
ttc24 ttc24 coding downstream 213241 12744236 ~ 12760023 (+)
G90370 NA non-coding upstream 20663 12508882 ~ 12509377 (+)
G90321 NA non-coding upstream 157804 12368843 ~ 12372236 (+)
G90245 NA non-coding upstream 239949 12286434 ~ 12290091 (+)
G90227 NA non-coding upstream 331243 12198521 ~ 12198797 (+)
G90188 NA non-coding upstream 420569 12107808 ~ 12109471 (+)
G90382 NA non-coding downstream 70507 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 196370 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 261517 12792512 ~ 12792983 (+)
G90488 NA non-coding downstream 378365 12909360 ~ 12997600 (+)
G90489 crtc2,LOC108436548 non-coding downstream 380543 12911538 ~ 12913057 (+)
G90199 cct3 other upstream 373178 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 391178 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1622868 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1738912 10780102 ~ 10791128 (+)
G89806 NA other upstream 1841220 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 1306 12532301 ~ 12552772 (+)
npy npy other downstream 413791 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1741000 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2114803 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2131662 14662657 ~ 14773367 (+)

Expression


Co-expression Network