ankrd34a (ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270)


Basic Information

Item Value
gene id ankrd34a
gene name ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12641421 ~ 12665395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673590.1
ctctctctctcatccactGGATCTGGGGGGCAACAAGCAGCGCGCCAATGGAGCTGATCTGAGGGGACGCAGCGCAGCCACGGTTGACCAGGACTGAGCTGAAGATGTGCAGACACTGAGGACGAGGAAGGCGAGGGAGCGGTAGGCAGCATGGGTGACGGAGGAGCCCTGCGTACAGAGGGGAACGCCCTCCTGAAGGCTGTGTTCCAGGGCAAGCTTCGTCTCGCTCGTCTACTGCTGGAGGGGGGAGCGTACATCAACGAGGGCAACGAGCGAGGGGAGACGCCCATCGTTGCCGCTTGCCTGGCAGGGTACGACGACCCACAGACCCGCCAGAGAATGGTGCGATATCTGCTAGAGAAAGGTGCTGACCCAAATATCCCTGATAAAACCGGCAGGACTGCTTTGATGCATGCGTGTGCAGAGCGTGCAGGCAAAGAGGTGGTGTCGCTGCTGTTAGAGAACGGAGCTGACCCAAGTCTTAAAGACTATTCTGGGTCATCGGCTTTGATACACGCCATCAACAAAGGCGACAGAGAAACCCTGCAGATCCTTCTAGATGCCTGTAAAGCTAAAGGCAAAGAAGTGATCATCATAACCACAGATACGTCCCCCTCGGGCACCAAGAAGACCAAGCAGTACCTGAACTCTCCACCTTCTCCAGGCGTGGTGGACAAACTCTCACCTGCCTGCATGTCTCCGTCGGAAGTCGAGATCCGCACGTCGAGCTCTCCCgctggagaagaggaggagggcaTCTTCAGCTTCGCTCTGACCACAGCCCTACCGCTACCTTCCAACAGACCACCAGGTGAGAGGAGACCACCACCACGTAAACTCCTCAAAAGGCTGAACTCAGAGCCTTGGGGCTTGGTGGCTCCAAGCATACTTGCTGAAAGAGGGGAGCGGGTGGAGAGTGACCTAGCAGAGGAGGAGAAGGTGACGACCGAGATGAACGGCCTATCGATCTCCGGTCCCGGCAGACCTCTGCTCTCGCGCAGACACAGCATCGAGACTCACGACCCCTGTTCTCCAAAGCTGATTGACCGTTCATGCTCAGAAGACTGTGCTGCACTCTCTGGCTCCTCCTGGGCTGACAAAGTCCAGCAGCATCAGTCGCTGTATCGCAGGAACACAGCACCCGAGTCACAGGAGAATGCCACCCACCCACCAGGGGCCACCCGCACACTGGCCCACCCTAAACTTACCCGCATGGAGCACTACGAGTCAGACACGCACCTGTGTCCCGAGTCCATCCCTGGATCTCCGGACTCTGGCCGAGTGTCCGTGGAGCGCCGAAAGTACAACGCCTCGCCGCTGTCCCTGCTCACCAGCTCCTCCCGAGAGTCGCTGGAGAGCATCCCAAACTCGGTATCTCCCATTACCATGAGGAGGAGGCCCCCAGGCCTGCTGGAACGCAGAGGCTCTGGCACGCTCCTCCTGGACCACATCTCGCACACACGGCCTGGATTTCTTCCTCCCCTTAACGTCAACCCCCAGCGGCCCATACCAGACATCCGTGCCAATGGAAAGCCCACCTCACCAGTGCACTCCAGCACCAAGATCCTGCTGCCCGTAGCCCCCTCCTCACCAAAACGTGGAATGGACTTCAAGATGAAGAAGAAGCTGTTGAGGAGGCACTCAATGCAGACGGAGCAGATGAAGCAGCTCTCCACATTTCGAGAGATTCTGGCAGAGAAAGTTATGGAGGTCAATGGAGATTGAGGCTAATGAGGGGGTACGATATATAGCAtatgcacagagagagagaaagagagagagagagaaatcaccTCAGAATCAAACCATAAGACACTGAGTACGTAAAAAATGCAGAAACAATAAGCTTAAGTAATTTAGTAATCAGTTcatatgctaatgctaaacatGAACAAATGACAGGGGATAGCCTATGGTTAGCATAATCATTATTCTTATTTAAATATTGACTTAAATGCTCAATGATGGCTACTGGTTTTCATCCTATTTCCATTCTATGGCTTATCGGATTCCCATGTTCCTTTGCTTCcatattgttgttttgttttgtttttttagctttttttgttggtttctCATTTTATATGAACGTTAGTTgctgttatttaaaatgtttctaaggTTCAAGCACAATTGCTTTCCACTTTTCACCTTCCTGacttgaaataaaaaagtgacaGCTTGAATGTAGTTCTGGAAAAAGTTAGCAAGGTTAGCCTAATGCTGCTAGCAGAGCTACGCATGTCCTAGCATGTCAGATGAACGTAAGATGCAGAACTAGTGTCAGCAATTATTTCCCTCCTGAAGACATAAAACAAGCGCTGTCTGTTAACTTCTTCTGTTTTCTTCAACATGGTTTCAATCAACTATCAGTCACTTTAATAAGACCATTTCTACTTAGTTCAAATGAGTAAAACTACGACTTTTGGCGACAGAAACAAAAGTCTGCTGATCTAATCTACTGCACACTGTAGGGGTGGAGAATGGACATTGTATGCATGGcgtgttttaaattttaaaaaatgaagtgcAATTCTCAACTCAGAATCCCAAAGATGTTCCATGAAACCCATTCATGTTTACTGTACCAAAAGGTGGGCTGGGGTGGAGAGCATGAATGTGAAGGACACGGCTGCTGTGCCTTGTGTGAAGAAGAGGCAGAACGCACCTGTAGATAATGTACAGATTTCACAGGCAGCGAGacaacaattttgtgtttccaGTGTTTTGTGTGGAATATTCTGTGCTGCAAGAATTCTGGTTTCATATTATCGTGGTGAACGTTGGGTGATCATTACATTTGCAGCACGATATAAAAAAAGCAATCTGCACTTCTGGGGAACATCGTGGCGTGCTGAATAACAGAATCACTGAACGGAAAAGGCAAACTTAGTTTACCCTCGCAGAGAGAAAATACACTCATTTGAAATCCAATTAGTTTCAGTGTAGTGTTTGTCAGTGTAGAGCgagaaaacacaatatatacaaataaacaaaacatagtTTAACAAAGCTTAAAATGTGGTTGATAGTCTTGCTTCTGTTTTATTACAGTTCTATTTAAGTGCTTTTTAGTTTGCCTatgttaatttatatatatgtggatAAAACTATGTGTACTTTaacatgaaaacaaaaacagagtaATATTTTTCTAAGCCGGTGATGGGACCCATTTTTCATCCTTTGTCATACTTCGCTTCACACCAGAGAGAATATGATATGATTTCACTGAGCCTTGCAGTGGCCGGGCTGGAAATGACCTCATGTGCTATCAGAGGGGTGGCTTTGCCAAGAGAACAGGATGAAACATCTTCACAGGATGTTTTAAATTTCAGCTGCTCTTGTAAacataaaggtgctacaaagggttctttgaggcaacgttcacacagcaggtaaaatgaACCAAATCGGATCTTTTTAATCAcatgagaaagaaaaacaatctgaatctgacttttttttaatagaaaagagTTGTGCCACCTTAATATGTGGTATTGAAATCTAATATAAATCCAAAACAGCAATGCAGCTGAATCATAGACAGTATATAAAAGAGTGTACAACAGCGTATAGCAATACTGTAGCGCAAAACATGTCCAAAATGAAACTGCCAAAAAGATATTTGCACAGTAGAGCCAAAGTATGTGCAGTAGAAGAGGGAGAAGAGGCAGTGTGATCCCCAACCcactacattcacattaccaggctgaagtgactcaaatcaaaGTTTTtatcaatgtggctcagatcagattttttcacg

Function

symbol description
ankrd34a Orthologous to human ANKRD34A (ankyrin repeat domain 34A).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 34A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673590.1 True 3772 mRNA 0.47 2 12641421 12665395

Neighbor

gene id symbol gene type direction distance location
LOC103036326 txnip,LOC103036326 coding upstream 31374 12607288 ~ 12610047 (+)
hfe2 hfe2 coding upstream 41572 12591058 ~ 12599849 (+)
thbs3 thbs3,thbs3a,LOC107666739,LOC107719129,LOC105896172,LOC106605431 coding upstream 56183 12557010 ~ 12585238 (+)
nudt17 nudt17 coding upstream 128486 12505041 ~ 12512935 (+)
LOC103045643 si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177 coding upstream 137293 12492664 ~ 12504128 (+)
ttc24 ttc24 coding downstream 78841 12744236 ~ 12760023 (+)
LOC103037789 LOC108436550,LOC108258408,LOC105908885 coding downstream 96892 12762287 ~ 12786180 (+)
stk31 NA coding downstream 261815 12927210 ~ 12944738 (+)
mpp6 mpp6,mpp6a,LOC108267518,LOC107749029,LOC107685533,LOC107596657 coding downstream 285222 12950617 ~ 12983779 (+)
LOC103024879 pde11al,LOC108441531,LOC107743218,LOC103364058 coding downstream 502260 13167655 ~ 13192266 (+)
G90382 NA non-coding upstream 39160 12601502 ~ 12602261 (+)
LOC111193294 NA non-coding upstream 110426 12530040 ~ 12530995 (+)
G90370 NA non-coding upstream 132044 12508882 ~ 12509377 (+)
G90321 NA non-coding upstream 269185 12368843 ~ 12372236 (+)
G90245 NA non-coding upstream 351330 12286434 ~ 12290091 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 61970 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 127117 12792512 ~ 12792983 (+)
G90488 NA non-coding downstream 243965 12909360 ~ 12997600 (+)
G90489 crtc2,LOC108436548 non-coding downstream 246143 12911538 ~ 12913057 (+)
G90502 NA non-coding downstream 337327 13002722 ~ 13016527 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 88649 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 484559 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 502559 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1734249 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1850293 10780102 ~ 10791128 (+)
npy npy other downstream 279391 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1606600 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 1980403 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 1997262 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 2494820 15160215 ~ 15216508 (+)

Expression


Co-expression Network