G90488


Basic Information

Item Value
gene id G90488
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12909360 ~ 12997600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121740
ATGGCGGACAGCGTGGGTGAGATGGTGGGAGAGAACTGTTTGGAGAGATGCCTGCGGGACTCCGGACCGATGGGTAGATTGAGAGGTGAGAGCTGGGTTCGCCTCCTGGGGGAGGTGCTTAGCTGCGGTTGTACCTGACCAGATAAGAGCGGGGAGTACGAACTCAAACAGGTGCCTGACCCGCCCACTGCACTAGCTGCTGACTGGTGGGACTGTCCACTTAGGGAGGAGTTACTCAAAGAGGACTGCAAGGACTGGTTGCTGAGGGAGGACTGTAATGAAGGGGAGGAGCTTAGCGAGGACTGCAGGGAAGGATTACTAAGTGAAGACTGAAGGGAGTTGGAGCTGAGAGAGTTAGGGAATGAGTGGCTGCTCAGAGATGACTGGATATTTGGGTTGCTGAGTGATGATTGGAGGGAGGGATTACTGAGCGTGCCCTAACATCCAGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121740 True 449 lncRNA 0.55 2 12909360 12997600

Neighbor

gene id symbol gene type direction distance location
LOC103037789 LOC108436550,LOC108258408,LOC105908885 coding upstream 123180 12762287 ~ 12786180 (+)
ttc24 ttc24 coding upstream 149337 12744236 ~ 12760023 (+)
ankrd34a ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270 coding upstream 243965 12641421 ~ 12665395 (+)
LOC103036326 txnip,LOC103036326 coding upstream 299313 12607288 ~ 12610047 (+)
hfe2 hfe2 coding upstream 309511 12591058 ~ 12599849 (+)
LOC103024879 pde11al,LOC108441531,LOC107743218,LOC103364058 coding downstream 170055 13167655 ~ 13192266 (+)
ascc3 ascc3 coding downstream 821491 13819091 ~ 14034911 (+)
sim1 sim1,sim1a,LOC107697271,LOC107661021,LOC103355653,LOC107551726 coding downstream 1039372 14036972 ~ 14056298 (+)
LOC103046158 LOC103046158,LOC108428940,LOC107095448 coding downstream 1112925 14110525 ~ 14119663 (+)
LOC103045642 yme1l1,LOC108428941,LOC108269264 coding downstream 1123399 14120999 ~ 14135976 (+)
G90459 NA non-coding upstream 116377 12792512 ~ 12792983 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding upstream 167816 12727365 ~ 12741544 (+)
G90382 NA non-coding upstream 307099 12601502 ~ 12602261 (+)
LOC111193294 NA non-coding upstream 378365 12530040 ~ 12530995 (+)
G90370 NA non-coding upstream 399983 12508882 ~ 12509377 (+)
G90502 NA non-coding downstream 5122 13002722 ~ 13016527 (+)
G90512 NA non-coding downstream 23414 13021014 ~ 13021239 (+)
G90513 NA non-coding downstream 24397 13021997 ~ 13022608 (+)
G90604 NA non-coding downstream 264943 13262543 ~ 13262851 (+)
G90605 NA non-coding downstream 269038 13266638 ~ 13266885 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 356588 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 752498 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 770498 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 2002188 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 2118232 10780102 ~ 10791128 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1274395 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 1648198 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 1665057 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 2162615 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 2278542 15276142 ~ 15283055 (+)

Expression


Co-expression Network