LOC103045643 (si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177)


Basic Information

Item Value
gene id LOC103045643
gene name si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12492664 ~ 12504128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673586.1
ctaACCTAGTTTACCTAGACTTAGCTAAACTAAGCTCGGTTAGCTTATCTGGCGACGTCAAGAACTCCAGATGTTCTCTCTCGTCCGCggcttgtggacaaaacggacCTTTAGGAAGGATATTTGGGacgtttttttaaacagaaaattcCTGTATAAAATATGTTCTGGGTCTCTGCAGTATAAAACAGACTGCAGCAGAAACCTGACTGTCGAGCCGCTGTCTGTGGGCTTAGCGTTGGGTCGACCTCCACACAGAGCTGAGAATTCCACAGACAGCTGCATCAGACTCTGCTGGTCTTGACAACAACGACTGGGTTCAGCCACCTCACCCCCCAAGACTGAGACAAGACTACGTCCATAATGAGGTCAAGAACGAGACGACTCATTTATGATCTCAAGACAGATATTTTAAGATGGAGAGAGGACCTGAGAACTACAACACAATTATTACTCTTTATTTCAGTTGACTGGGctggacaggacaggacaggcATCTGTCTACATATCCTGTAGGATTTTAAATCCTAGTCCTGGACTGAACAGCATTTGAATAGAGATTTTGCAGCTTACTTCAAGACCGTATAGCTGTGCATTGTCAGTAGCCCATTTCCTGCAGACTGCCAGACTAGCCCCAAAAATCCTTTACATAATTGATAACTAGGTTATAAATACACCAGCACACAAGGGCTCCTCCATCATGTGAAGTGCTGCATGGGTGTCCTGTCGagtgagagaggcagagagagagagagaggggagagagagcagcTGCCTGAGTTAGTTCTTCCTTCCCGTCCAATCGCCTCCCATGATTACATCAACAGTGCTGCATCGTGCTCGCGCCTGGGCTGCAGCGACCCCTCCTCTATTTTTGCACGCGGATAGCTCTCTCTGCACAACTGCACTTCACACAGCAAGTGTTTTCGCACACAGTCCTGTCTGAAACACTCGCGATGTCGCTGTACCCGTCTCAGATGAAAGCTTTCAAAAGCGCCGAGCCCAAAACCCTCGGGGCAGTGGAAATGATAATTGGCACGCTGACAGTCATTCTGAGCACTATCGTCTATAAACTGCACTACCATATCCAGCGGGagatcatcatcctcatcataaATGGTGCTCAGctcctTATTACTGGAATTGTGTTGGTGCATGCTGGCAGGAAACCTACTAAATGCCTGgTGGGTACAAACATTGTTTTGCAGCTCCTGACCGCAGCGTTTGATATTGTTGGATTTGGTCTCATGGCCAGGCATATTCCTTTCCGTGGGGAGTCTTATTATTACAGAGACACTGAGTGGTGTTGTGACCCACTCCATTCAGTTTGGGCTTGCTgtggagaaggagagagagggggccACAAAGAGTTTTTGGTGAATGGGATTTTGTGCACTCTGATTGGTTGCTTGGTGCTGGCATGTATTATTGGTCTGGTCGTGGCACTTTTTGGTGTGTACGCCCTGTCTGTCAGTGCTATTAAGGACATGACACCAATTCCGAACGCCACAGGAAATCCACAGTTCAGTGCTGGAGGACACACCAGGTGCTGTCCGTGGTTGGCTCCTTGGATTCTGGAACGTTACAGCGGGAGATTGCTGACAGGTCAGGAATTTCTCTGAGTCACATACGTCTGCGACGTCGATTTCCTCGCTGTATCAAATTTCCTACAGCGAGCAACCAATGAATAGGAAGAATAGAATAAAAGCATCTTAATTGAATGCACTTTATTCAATAAAACTTAAACTTCCACATCAGAATAGTTGTCTGATTTGATTTCTCAGTCCAAGAAATGCGTCAAGAAACGCGCACATAcacatttttgccttttttttttttttgcctttttttgccttttttttacacatacacGTCTGGAGTTTACTCTACATTCGTGAATTTGATAAAAAGTTTGCAGGAAGTTCTATTTCAcacataatttatttgcagtttGCTCCCGTTTTTACAAAGGTTTCATATGTGAGGCCCATTGACGCAACTCTGCTCTGTAGCTCTGTAGGCATCATTTGCATGAAACATCAGGCAAGTCAACCTAGTAAAAATGGGATAATACTGAACATTTATCAAGCTTTCCCTTAAAAAACAGAACTGGGCCCATTGCAGAATCGAGCTGGTCGACCCaaagaataatttaaaatgacaCAACAATACATATTGAATGACTAACCAGCTTATTTATTAGAAAAGACacatctattatatatataaaactaatatatgttaaattatattcacattttctaatTGATAGAACAGTTTGATGATTTTGCCAAAGAATGAAAGCTTGATAAATGTTGCCCAGTATAATTTAGAAAACACATCTGAAATTGCGTGTGTTTCTAATGGGGAGGAACAATTTTAGAATTATGAAAGCATTAACACAGAATAATGATTGGCATTGCTTGGCTTTTTTTGTCATCTTGTTTTATCTTTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTTTGTAAGTGCCACCAATTGTGACCAAAATTATggacactaaaaaaacaaaacgtcAGAGGTTGAACCCTCACTCAAGGGCTCAACTGGTGTTGTAAAATCCTCCTGTGGAAGCATGTGTTGTCAGTTCACAATACTGTTTGTGTCAGTATATCATTGCCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTATTATAATGATCTCTTTCTATGTAGTGATGTAAAAATGTAGGCAGTTTCATGTGTGTTTATGAATGATTgatatttcaaataaatacaatttattagacaaaaaaatatttttcttagtTTGTTGGACATTGAAGAACTTACGATTTTATAAACATAAGAATATTTCTGAATTGTTTAAAGCTGCAATCCGAGAGTTCTTTCAGAATAAATATGTGCATCTA
>XM_022673587.1
CTAGTTTACCTAGACTTAGCTAAACTAAGCTCGGTTAGCTTATCTGGCGACGTCAAGAACTCCAGATGTTCTCTCTCGTCCGCggcttgtggacaaaacggacCTTTAGGAAGGATATTTGGGacgtttttttaaacagaaaattcCTGTATAAAATATGTTCTGGGTCTCTGCAGTATAAAACAGACTGCAGCAGAAACCTGACTGTCGAGCCGCTGTCTGTGGGCTTAGCGTTGGGTCGACCTCCACACAGAGCTGAGAATTCCACAGACAGCTGCATCAGACTCTGCTGGTCTTGACAACAACGACTGGGTTCAGCCACCTCACCCCCCAAGACTGAGACAAGACTACGTCCATAATGAGGTCAAGAACGAGACGACTCATTTATGATCTCAAGACAGATATTTTAAGATGGAGAGAGGACCTGAGAACTACAACACAATTATTACTCTTTATTTCAGTTGACTGGGctggacaggacaggacaggcATCTGTCTACATATCCTGTAGGATTTTAAATCCTAGTCCTGGACTGAACAGCATTTGAATAGAGATTTTGCAGCTTACTTCAAGACCGTATAGCTGTGCATTGTCAGTAGCCCATTTCCTGCAGACTGCCAGACTAGCCCCAAAAATCCTTTACATAATTGATAACTAGGTTATAAATACACCAGCACACAAGGGCTCCTCCATCATGTGAAGTGCTGCATGGGTGTCCTGTCGagtgagagaggcagagagagagagagaggggagagagagcagcTGCCTGAGTTAGTTCTTCCTTCCCGTCCAATCGCCTCCCATGATTACATCAACAGTGCTGCATCGTGCTCGCGCCTGGGCTGCAGCGACCCCTCCTCTATTTTTGCACGCGGATAGCTCTCTCTGCACAACTGCACTTCACACAGCAAGTGTTTTCGCACACAGTCCTGTCTGAAACACTCGCGATGTCGCTGTACCCGTCTCAGATGAAAGCTTTCAAAAGCGCCGAGCCCAAAACCCTCGGGGCAGTGGAAATGATAATTGGCACGCTGACAGTCATTCTGAGCACTATCGTCTATAAACTGCACTACCATATCCAGCGGGagatcatcatcctcatcataaATGGTGCTCAGctcctTATTACTGGAATTGTGTTGGTGCATGCTGGCAGGAAACCTACTAAATGCCTGgTGGGTACAAACATTGTTTTGCAGCTCCTGACCGCAGCGTTTGATATTGTTGGATTTGGTCTCATGGCCAGGCATATTCCTTTCCGTGGGGAGTCTTATTATTACAGAGACACTGAGTTTTTGGTGAATGGGATTTTGTGCACTCTGATTGGTTGCTTGGTGCTGGCATGTATTATTGGTCTGGTCGTGGCACTTTTTGGTGTGTACGCCCTGTCTGTCAGTGCTATTAAGGACATGACACCAATTCCGAACGCCACAGGAAATCCACAGTTCAGTGCTGGAGGACACACCAGGTGCTGTCCGTGGTTGGCTCCTTGGATTCTGGAACGTTACAGCGGGAGATTGCTGACAGGTCAGGAATTTCTCTGAGTCACATACGTCTGCGACGTCGATTTCCTCGCTGTATCAAATTTCCTACAGCGAGCAACCAATGAATAGGAAGAATAGAATAAAAGCATCTTAATTGAATGCACTTTATTCAATAAAACTTAAACTTCCACATCAGAATAGTTGTCTGATTTGATTTCTCAGTCCAAGAAATGCGTCAAGAAACGCGCACATAcacatttttgccttttttttttttttgcctttttttgccttttttttacacatacacGTCTGGAGTTTACTCTACATTCGTGAATTTGATAAAAAGTTTGCAGGAAGTTCTATTTCAcacataatttatttgcagtttGCTCCCGTTTTTACAAAGGTTTCATATGTGAGGCCCATTGACGCAACTCTGCTCTGTAGCTCTGTAGGCATCATTTGCATGAAACATCAGGCAAGTCAACCTAGTAAAAATGGGATAATACTGAACATTTATCAAGCTTTCCCTTAAAAAACAGAACTGGGCCCATTGCAGAATCGAGCTGGTCGACCCaaagaataatttaaaatgacaCAACAATACATATTGAATGACTAACCAGCTTATTTATTAGAAAAGACacatctattatatatataaaactaatatatgttaaattatattcacattttctaatTGATAGAACAGTTTGATGATTTTGCCAAAGAATGAAAGCTTGATAAATGTTGCCCAGTATAATTTAGAAAACACATCTGAAATTGCGTGTGTTTCTAATGGGGAGGAACAATTTTAGAATTATGAAAGCATTAACACAGAATAATGATTGGCATTGCTTGGCTTTTTTTGTCATCTTGTTTTATCTTTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTTTGTAAGTGCCACCAATTGTGACCAAAATTATggacactaaaaaaacaaaacgtcAGAGGTTGAACCCTCACTCAAGGGCTCAACTGGTGTTGTAAAATCCTCCTGTGGAAGCATGTGTTGTCAGTTCACAATACTGTTTGTGTCAGTATATCATTGCCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTATTATAATGATCTCTTTCTATGTAGTGATGTAAAAATGTAGGCAGTTTCATGTGTGTTTATGAATGATTgatatttcaaataaatacaatttattagacaaaaaaatatttttcttagtTTGTTGGACATTGAAGAACTTACGATTTTATAAACATAAGAATATTTCTGAATTGTTTAAAGCTGCAATCCGAGAGTTCTTTCAGAATAAATATGTGCATCTA
>XM_022673588.1
CGTTTTATCCGGATTGGCGACAAGGCTgcgttaactaattactaactaACCTAGTTTACCTAGACTTAGCTAAACTAAGCTCGGTTAGCTTATCTGGCGACGTCAAGAACTCCAGATGTTCTCTCTCGTCCGCggcttgtggacaaaacggacCTTTAGGAAGGATATTTGGGacgtttttttaaacagaaaattcCTGTATAAAATATGTTCTGGGTCTCTGCAGTATAAAACAGACTGCAGCAGAAACCTGACTGTCGAGCCGCTGTCTGTGGGCTTAGCGTTGGGTCGACCTCCACACAGAGCTGAGAATTCCACAGACAGCTGCATCAGACTCTGCTGGTCTTGACAACAACGACTGGGTTCAGCCACCTCACCCCCCAAGACTGAGACAAGACTACGTCCATAATGAGGTCAAGAACGAGACGACTCATTTATGATCTCAAGACAGATATTTTAAGATGGAGAGAGGACCTGAGAACTACAACACAATTATTACTCTTTATTTCAGTTGACTGGGctggacaggacaggacaggcATCTGTCTACATATCCTGTAGGATTTTAAATCCTAGTCCTGGACTGAACAGCATTTGAATAGAGATTTTGCAGCTTACTTCAAGACCGTATAGCTGTGCATTGTCAGTAGCCCATTTCCTGCAGACTGCCAGACTAGCCCCAAAAATCCTTTACATAATTGATAACTAGGTTATAAATACACCAGCACACAAGGGCTCCTCCATCATGTGAAGTGCTGCATGGGTGTCCTGTCGagtgagagaggcagagagagagagagaggggagagagagcagcTGCCTGAGTTAGTTCTTCCTTCCCGTCCAATCGCCTCCCATGATTACATCAACAGTGCTGCATCGTGCTCGCGCCTGGGCTGCAGCGACCCCTCCTCTATTTTTGCACGCGGATAGCTCTCTCTGCACAACTGCACTTCACACAGCAAGGCAGTGGAAATGATAATTGGCACGCTGACAGTCATTCTGAGCACTATCGTCTATAAACTGCACTACCATATCCAGCGGGagatcatcatcctcatcataaATGGTGCTCAGctcctTATTACTGGAATTGTGTTGGTGCATGCTGGCAGGAAACCTACTAAATGCCTGgTGGGTACAAACATTGTTTTGCAGCTCCTGACCGCAGCGTTTGATATTGTTGGATTTGGTCTCATGGCCAGGCATATTCCTTTCCGTGGGGAGTCTTATTATTACAGAGACACTGAGTGGTGTTGTGACCCACTCCATTCAGTTTGGGCTTGCTgtggagaaggagagagagggggccACAAAGAGTTTTTGGTGAATGGGATTTTGTGCACTCTGATTGGTTGCTTGGTGCTGGCATGTATTATTGGTCTGGTCGTGGCACTTTTTGGTGTGTACGCCCTGTCTGTCAGTGCTATTAAGGACATGACACCAATTCCGAACGCCACAGGAAATCCACAGTTCAGTGCTGGAGGACACACCAGGTGCTGTCCGTGGTTGGCTCCTTGGATTCTGGAACGTTACAGCGGGAGATTGCTGACAGGTCAGGAATTTCTCTGAGTCACATACGTCTGCGACGTCGATTTCCTCGCTGTATCAAATTTCCTACAGCGAGCAACCAATGAATAGGAAGAATAGAATAAAAGCATCTTAATTGAATGCACTTTATTCAATAAAACTTAAACTTCCACATCAGAATAGTTGTCTGATTTGATTTCTCAGTCCAAGAAATGCGTCAAGAAACGCGCACATAcacatttttgccttttttttttttttgcctttttttgccttttttttacacatacacGTCTGGAGTTTACTCTACATTCGTGAATTTGATAAAAAGTTTGCAGGAAGTTCTATTTCAcacataatttatttgcagtttGCTCCCGTTTTTACAAAGGTTTCATATGTGAGGCCCATTGACGCAACTCTGCTCTGTAGCTCTGTAGGCATCATTTGCATGAAACATCAGGCAAGTCAACCTAGTAAAAATGGGATAATACTGAACATTTATCAAGCTTTCCCTTAAAAAACAGAACTGGGCCCATTGCAGAATCGAGCTGGTCGACCCaaagaataatttaaaatgacaCAACAATACATATTGAATGACTAACCAGCTTATTTATTAGAAAAGACacatctattatatatataaaactaatatatgttaaattatattcacattttctaatTGATAGAACAGTTTGATGATTTTGCCAAAGAATGAAAGCTTGATAAATGTTGCCCAGTATAATTTAGAAAACACATCTGAAATTGCGTGTGTTTCTAATGGGGAGGAACAATTTTAGAATTATGAAAGCATTAACACAGAATAATGATTGGCATTGCTTGGCTTTTTTTGTCATCTTGTTTTATCTTTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTTTGTAAGTGCCACCAATTGTGACCAAAATTATggacactaaaaaaacaaaacgtcAGAGGTTGAACCCTCACTCAAGGGCTCAACTGGTGTTGTAAAATCCTCCTGTGGAAGCATGTGTTGTCAGTTCACAATACTGTTTGTGTCAGTATATCATTGCCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTATTATAATGATCTCTTTCTATGTAGTGATGTAAAAATGTAGGCAGTTTCATGTGTGTTTATGAATGATTgatatttcaaataaatacaatttattagacaaaaaaatatttttcttagtTTGTTGGACATTGAAGAACTTACGATTTTATAAACATAAGAATATTTCTGAATTGTTTAAAGCTGCAATCCGAGAGTTCTTTCAGAATAAATATGTGCATCTA

Function

symbol description
si:dkey-7j14.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: uncharacterized protein LOC108436563

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673586.1 True 2906 mRNA 0.42 10 12492709 12504128
XM_022673587.1 False 2832 mRNA 0.41 9 12492714 12504128
XM_022673588.1 False 2856 mRNA 0.41 9 12492664 12504128

Neighbor

gene id symbol gene type direction distance location
LOC103029364 NA coding upstream 2278 12483951 ~ 12490386 (+)
LOC103029682 NA coding upstream 10102 12473174 ~ 12482562 (+)
adam15 adam15,LOC107717790 coding upstream 20634 12425639 ~ 12472030 (+)
dcst1 NA coding upstream 68447 12387903 ~ 12424217 (+)
LOC103037179 LOC103037179 coding upstream 132017 12339941 ~ 12360647 (+)
nudt17 nudt17 coding downstream 913 12505041 ~ 12512935 (+)
thbs3 thbs3,thbs3a,LOC107666739,LOC107719129,LOC105896172,LOC106605431 coding downstream 52882 12557010 ~ 12585238 (+)
hfe2 hfe2 coding downstream 86930 12591058 ~ 12599849 (+)
LOC103036326 txnip,LOC103036326 coding downstream 103160 12607288 ~ 12610047 (+)
ankrd34a ankrd34a,LOC107719128,LOC107666885,LOC107714325,LOC107592270 coding downstream 137293 12641421 ~ 12665395 (+)
G90321 NA non-coding upstream 120428 12368843 ~ 12372236 (+)
G90245 NA non-coding upstream 202573 12286434 ~ 12290091 (+)
G90227 NA non-coding upstream 293867 12198521 ~ 12198797 (+)
G90188 NA non-coding upstream 383193 12107808 ~ 12109471 (+)
G90159 NA non-coding upstream 474322 11992754 ~ 12018342 (+)
G90370 NA non-coding downstream 4754 12508882 ~ 12509377 (+)
LOC111193294 NA non-coding downstream 25912 12530040 ~ 12530995 (+)
G90382 NA non-coding downstream 97374 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 223237 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 288384 12792512 ~ 12792983 (+)
G90199 cct3 other upstream 335802 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 353802 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1585492 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1701536 10780102 ~ 10791128 (+)
G89806 NA other upstream 1803844 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 28173 12532301 ~ 12552772 (+)
npy npy other downstream 440658 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1767867 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2141670 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2158529 14662657 ~ 14773367 (+)

Expression


Co-expression Network