RNA id: XM_022673587.1


Basic Information

Item Value
RNA id XM_022673587.1
length 2832
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC103045643
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12492664 ~ 12504128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGTTTACCTAGACTTAGCTAAACTAAGCTCGGTTAGCTTATCTGGCGACGTCAAGAACTCCAGATGTTCTCTCTCGTCCGCggcttgtggacaaaacggacCTTTAGGAAGGATATTTGGGacgtttttttaaacagaaaattcCTGTATAAAATATGTTCTGGGTCTCTGCAGTATAAAACAGACTGCAGCAGAAACCTGACTGTCGAGCCGCTGTCTGTGGGCTTAGCGTTGGGTCGACCTCCACACAGAGCTGAGAATTCCACAGACAGCTGCATCAGACTCTGCTGGTCTTGACAACAACGACTGGGTTCAGCCACCTCACCCCCCAAGACTGAGACAAGACTACGTCCATAATGAGGTCAAGAACGAGACGACTCATTTATGATCTCAAGACAGATATTTTAAGATGGAGAGAGGACCTGAGAACTACAACACAATTATTACTCTTTATTTCAGTTGACTGGGctggacaggacaggacaggcATCTGTCTACATATCCTGTAGGATTTTAAATCCTAGTCCTGGACTGAACAGCATTTGAATAGAGATTTTGCAGCTTACTTCAAGACCGTATAGCTGTGCATTGTCAGTAGCCCATTTCCTGCAGACTGCCAGACTAGCCCCAAAAATCCTTTACATAATTGATAACTAGGTTATAAATACACCAGCACACAAGGGCTCCTCCATCATGTGAAGTGCTGCATGGGTGTCCTGTCGagtgagagaggcagagagagagagagaggggagagagagcagcTGCCTGAGTTAGTTCTTCCTTCCCGTCCAATCGCCTCCCATGATTACATCAACAGTGCTGCATCGTGCTCGCGCCTGGGCTGCAGCGACCCCTCCTCTATTTTTGCACGCGGATAGCTCTCTCTGCACAACTGCACTTCACACAGCAAGTGTTTTCGCACACAGTCCTGTCTGAAACACTCGCGATGTCGCTGTACCCGTCTCAGATGAAAGCTTTCAAAAGCGCCGAGCCCAAAACCCTCGGGGCAGTGGAAATGATAATTGGCACGCTGACAGTCATTCTGAGCACTATCGTCTATAAACTGCACTACCATATCCAGCGGGagatcatcatcctcatcataaATGGTGCTCAGctcctTATTACTGGAATTGTGTTGGTGCATGCTGGCAGGAAACCTACTAAATGCCTGgTGGGTACAAACATTGTTTTGCAGCTCCTGACCGCAGCGTTTGATATTGTTGGATTTGGTCTCATGGCCAGGCATATTCCTTTCCGTGGGGAGTCTTATTATTACAGAGACACTGAGTTTTTGGTGAATGGGATTTTGTGCACTCTGATTGGTTGCTTGGTGCTGGCATGTATTATTGGTCTGGTCGTGGCACTTTTTGGTGTGTACGCCCTGTCTGTCAGTGCTATTAAGGACATGACACCAATTCCGAACGCCACAGGAAATCCACAGTTCAGTGCTGGAGGACACACCAGGTGCTGTCCGTGGTTGGCTCCTTGGATTCTGGAACGTTACAGCGGGAGATTGCTGACAGGTCAGGAATTTCTCTGAGTCACATACGTCTGCGACGTCGATTTCCTCGCTGTATCAAATTTCCTACAGCGAGCAACCAATGAATAGGAAGAATAGAATAAAAGCATCTTAATTGAATGCACTTTATTCAATAAAACTTAAACTTCCACATCAGAATAGTTGTCTGATTTGATTTCTCAGTCCAAGAAATGCGTCAAGAAACGCGCACATAcacatttttgccttttttttttttttgcctttttttgccttttttttacacatacacGTCTGGAGTTTACTCTACATTCGTGAATTTGATAAAAAGTTTGCAGGAAGTTCTATTTCAcacataatttatttgcagtttGCTCCCGTTTTTACAAAGGTTTCATATGTGAGGCCCATTGACGCAACTCTGCTCTGTAGCTCTGTAGGCATCATTTGCATGAAACATCAGGCAAGTCAACCTAGTAAAAATGGGATAATACTGAACATTTATCAAGCTTTCCCTTAAAAAACAGAACTGGGCCCATTGCAGAATCGAGCTGGTCGACCCaaagaataatttaaaatgacaCAACAATACATATTGAATGACTAACCAGCTTATTTATTAGAAAAGACacatctattatatatataaaactaatatatgttaaattatattcacattttctaatTGATAGAACAGTTTGATGATTTTGCCAAAGAATGAAAGCTTGATAAATGTTGCCCAGTATAATTTAGAAAACACATCTGAAATTGCGTGTGTTTCTAATGGGGAGGAACAATTTTAGAATTATGAAAGCATTAACACAGAATAATGATTGGCATTGCTTGGCTTTTTTTGTCATCTTGTTTTATCTTTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTTTGTAAGTGCCACCAATTGTGACCAAAATTATggacactaaaaaaacaaaacgtcAGAGGTTGAACCCTCACTCAAGGGCTCAACTGGTGTTGTAAAATCCTCCTGTGGAAGCATGTGTTGTCAGTTCACAATACTGTTTGTGTCAGTATATCATTGCCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTATTATAATGATCTCTTTCTATGTAGTGATGTAAAAATGTAGGCAGTTTCATGTGTGTTTATGAATGATTgatatttcaaataaatacaatttattagacaaaaaaatatttttcttagtTTGTTGGACATTGAAGAACTTACGATTTTATAAACATAAGAATATTTCTGAATTGTTTAAAGCTGCAATCCGAGAGTTCTTTCAGAATAAATATGTGCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121510 lncRNA upstream 120478 12368843 ~ 12372236 (+) True G90321
TU121417 lncRNA upstream 202623 12286434 ~ 12290091 (+) True G90245
TU121398 lncRNA upstream 293917 12198521 ~ 12198797 (+) True G90227
TU121354 lncRNA upstream 383243 12107808 ~ 12109471 (+) True G90188
TU121320 lncRNA upstream 474372 11992754 ~ 12018342 (+) True G90159
TU121587 lncRNA downstream 4754 12508882 ~ 12509377 (+) True G90370
XR_002650412.1 lncRNA downstream 25912 12530040 ~ 12530995 (+) True LOC111193294
TU121596 lncRNA downstream 28222 12532350 ~ 12541876 (+) False LOC103044318
TU121602 lncRNA downstream 97374 12601502 ~ 12602261 (+) True G90382
TU121690 lncRNA downstream 223237 12727365 ~ 12741544 (+) True G90452
XM_022673585.1 mRNA upstream 2328 12483951 ~ 12490386 (+) True LOC103029364
XM_007243148.3 mRNA upstream 2328 12483967 ~ 12490386 (+) False LOC103029364
XM_022673584.1 mRNA upstream 10152 12473174 ~ 12482562 (+) True LOC103029682
XM_022673582.1 mRNA upstream 20684 12425645 ~ 12472030 (+) False adam15
XM_007249667.3 mRNA downstream 913 12505041 ~ 12512935 (+) True nudt17
XM_007249663.3 mRNA downstream 28173 12532301 ~ 12552772 (+) True LOC103044318
XM_022673589.1 mRNA downstream 52882 12557010 ~ 12585238 (+) True thbs3
XM_007237731.2 mRNA downstream 86930 12591058 ~ 12599849 (+) True hfe2
XM_007237732.3 mRNA downstream 103160 12607288 ~ 12610047 (+) True LOC103036326
TU121367 other upstream 335852 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 354076 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 1585542 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 1803894 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 1806658 10685657 ~ 10686056 (+) True G89805
TU121747 other downstream 440700 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 1767936 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 2656087 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 2772125 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 2777381 15281509 ~ 15283055 (+) False LOC103025288

Expression Profile