RNA id: TU121367



Basic Information


Item Value
RNA id TU121367
length 980
RNA type TUCP
GC content 0.48
exon number 3
gene id G90199
representative True

Chromosome Information


Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12154897 ~ 12156862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tTTCGTGCCAAATCCATAATTTAATGTGTGATTTCTGGTTCTGTTGGCACATTATGGTAATTCCATCCATCCGTGCATGAGAGCCAATAAACAGACAAGTCAGTGTAAAAGAAATATACTGTCAAGCTCAAACTCAGACATCCTCCTCTGTTACAACCCTGACACAGTGTCATTTGATATTGAAATTTATCAGCAGTAGCAAATAAAAGGTAACAACCTCAGCAGACAGGTATGGAGTGAAGCATCAGAGTggatatacacacactcaggtgTTAACACACAaatctaaacatttaaatatttcccCTCACACAGGGGCAGAACACACAGGACTGAGTgtagttttaaataaatcaagGCCTAATTGTAGAAAAATCCAAACATTGTGGTCATTTGAGAACAGTCCATCACTAACCAGTATCAACTATTCTAGACATCCACCTTTTTGATCTTGTTTCACTCCCATTTTTTTACACCTTCATGTTTCCATGCTTCCATGTCCATCTACTCAGCTCCCTGCCCTCCTGTCTGCTCTGCTTTGTCTCCCTTTTTCTTGTGCCCAGACACGATGTCATCAATACGGAGGAGCAGGATGGCCGTCTCCACTGCAGTCTTGTATGTCTGAGCTTTGACAGCCAGAGGCTCCCAGATGCCCAGCTCTACCATGTCTGCAAGAGTGCCTGTCTCGCCATTTACGCCCCACGAGGTGCTGCCCTCCTGGGTGTGCTTCGCCCTAAGAGACGTGAGCACACGGATGGTAGAGGCACCGCAGTTCTGGATGAGGGTGCGGGGGATAACCTCCAGGGCCTGGGCAACAGCACGGTAAGGCCACTGTTCCACACCAGTCAGGGCTCTGGAGCGCTCAGTCAGCCTGTGGGAGACTGCCATCTCTACAGCACCACCACCTGGCAGCAGGTATGGGTCCAGCAACACGTTACGGCACACTTGCATGGCATCCTGCAGGTTACGCTCCACCtcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121354 lncRNA upstream 45426 12107808 ~ 12109471 (+) True G90188
TU121320 lncRNA upstream 136555 11992754 ~ 12018342 (+) True G90159
TU121294 lncRNA upstream 174588 11970116 ~ 11980309 (+) True G90139
TU121268 lncRNA upstream 385626 11768358 ~ 11769271 (+) True G90117
TU121094 lncRNA upstream 577545 11548096 ~ 11577352 (+) True G89995
TU121398 lncRNA downstream 41659 12198521 ~ 12198797 (+) True G90227
TU121417 lncRNA downstream 129572 12286434 ~ 12290091 (+) True G90245
TU121510 lncRNA downstream 211981 12368843 ~ 12372236 (+) True G90321
TU121587 lncRNA downstream 352020 12508882 ~ 12509377 (+) True G90370
XR_002650412.1 lncRNA downstream 373178 12530040 ~ 12530995 (+) True LOC111193294
XM_022673567.1 mRNA upstream 7418 12141688 ~ 12147479 (+) True LOC103025286
XM_007249690.3 mRNA upstream 7418 12141691 ~ 12147479 (+) False LOC103025286
XM_015605913.2 mRNA upstream 7418 12142121 ~ 12147479 (+) False LOC103025286
XM_022673566.1 mRNA upstream 16035 12135279 ~ 12138862 (+) True LOC103025787
XM_007249692.3 mRNA upstream 16035 12135280 ~ 12138862 (+) False LOC103025787
XM_022673570.1 mRNA downstream 39524 12196386 ~ 12198433 (+) True LOC111193332
XM_007249680.3 mRNA downstream 136323 12293185 ~ 12308174 (+) True LOC103022359
XM_007249676.2 mRNA downstream 155874 12312736 ~ 12333793 (+) True LOC103021300
XM_007249830.3 mRNA downstream 183079 12339941 ~ 12360647 (+) True LOC103037179
XM_022673580.1 mRNA downstream 231041 12387903 ~ 12424217 (+) True dcst1
TU121370 other upstream 16259 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 1247725 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 1466077 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 1468841 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 2544643 9602771 ~ 9610254 (+) True G89453
TU121747 other downstream 787966 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 2115202 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 3003353 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 3119391 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 3124647 15281509 ~ 15283055 (+) False LOC103025288

Expression Profile