RNA id: XM_007249692.3


Basic Information

Item Value
RNA id XM_007249692.3
length 2425
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC103025787
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12135279 ~ 12138862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTAGTGCGATCAGCGTGTCTGACAGAGACCAAAtggaaatatattattaatgtgtTCAAGGCCAAAGTTGACCATGATGACTATATTTAGCATGTGTTGATCTGACACATCTCTGAGCCCTTATTGAATCTTCATGCTCCAGTGAAACAGTGATTTGCGGAGAGCCTCAGTTGGATCACACATCCCTCTCGCTCGCCCAGCATTCGCCGAACACACTTGGAGGAATTGCTATGGCAACTGGTTGCTATGGGTGATGTgacaccaccacacactcatCTGCTGGAGGGAGAGGGAGTTGGACAACAAAAGCCAGGGATGCAAAGCAAGGAGGAGAAGCTGTTATTCTGATCCCTGAATGAAGCGAGGGTCCGGCTTCTGAAAAAAGTTGGGGAGACGTATGGCTTCGGGCAGGCAGCCATAATGGAAAAGGAGCCTCTCTTCGTTTATTTTCGGCGTCTGTCTGCCTCCTGCTTCTGACGGATCTGTTTTAGCTGCTCCTCCACAACAGGGGGACTTGTTGAATCTGAGGCTCGCCCGTGATGAGCCCACGCTGAGCCCGTGCTGAGGGAGGCTGCTGGATTAGGGAGCTGCTAGGGTGCGCAAGGCTGAGGATGGCGGAGCACCTCCACAGCAGCACGCTGTCGGCATCGGGGGCCAATCAGCCCATCCCTTTCCTCACCCTGGAGCAGAAGGCGGCCTTCGTCTTTGTGCTGCTCCTCTTTATCTTCCTGGGCCTGCTGATCGTGCGCTGCTTCCGCATCTTGCTGGACCCCTACAGCAGCATGCCCTCCTCCACATGGACAGACTATATGGAGAAAGACACGTTTGACTACCGCATCGCCTGAGGGACACTGCCCGGGGTCACGGGGGCCACAGGCGATGGCTACCTCACTGCCTCCACTGCAGAGAGGCCTGGCGTCTACACGGTACCGCCGTGCCACTCTGGTGGCGTGCGTCTGGTGGCATGATGTGTCATTTTTAAGAGTCACATGGTATAAACGTTCACAAGTCCTCTCATTCCATCCGTCAGTTCTTATGGGATATTTTACTGCCAGCAAAATACCTCACACCTCTCAACACAGCTGATAATTGATGTCAAGTCCAGAAGGAGAGTATTAGCGATGACACATCCGTAACTTAAACTAGCCAATTACCTGTCACAGGCTGTTCGGGTGAGCTGTTTGGCGGACCTATGGAACCTTGTGTTCCTGCAGTGTTTAATgatgcatttgttttgtttgttttgtttgataaaaTGAGATTATTCCTTTACTGGATTTATTTGTACACTACCTTGGTAGGATTATAAAGTGCTTTGGTTTGAGGATTGTGAAATCCTCTGAGCTCTTCGTTGAGAAAGTCCTGAGCTTTCAGCCTTACGATTCAGTGTGTTTACAGAGCCGCCAGGAGAAAACTGGCCTTGCTGTTATTAAGCTAAATGTCAATCAATGTAATGAACCAACCACCCTCCTTGGGCATCTGAAAGAGCACTTTGACGAGTTCCCCTCTCTCTatctgcctctttctctctgtctctctcccttactctctctctgtctctctctctgtctctcactttctctgtctctttctctctctctctctctctgtctaactGCAGTGTGCTTTAATAGGGTGTGTCTGATGTTGTGCATATCGTTCAACAGTATTTGCCGACACTGAAATGAACTGTTCATTCTGATGGTGTGAATTTGCTGTAGTGCACAGGCTATCAGTGGATTAGTGTTTGTGCGCAAATTCTCTGGTGTAAGCTGTGGTTCTAGCTTAACTCCATGTTTTTGAAAAAGAAATCAAACCAAGCTCACACAAGCAAGAAAACGTGTCTATGATGTGCAGAGAAGATCAGTATTTGCCATTCTGGTGCCTGTTTCTATTTCATTTTACTATTTGCTAATGCTTTACAGTCTGTAAAGGTAAGATTGCTCTGTTATTAACTTGCCCATATTGAGGACAGTTATTGCCACAGTACACTAAGCTCCAGTGTCGGGAATGACGGTCGTCATTATAATGCACATTGTGTTTTAgctgagtggtgtgtgtgtgtgggtgtgggcctgtgtgtgtgtgtgagtgctctAATGCGCGTGTGATCTATTAGATATTTAATGCTGACAGACGCTAGTTTTTTCAGAAAGACCATGTGCCATGTGGTTCACAAGTGGGTCTTGCATTTgttgtgctttttatatttgtttccaAATAAAGATAAATGTATTTCTCTCAAACAGACTGCAAACACTGAATTACTTCAGCACTTTCTCATGTTCCTAATGCCTCGTAAAGGGGTGTGCCATTTTGTGCTACTTTGCTTTATTTTGTAAAGTAACCTCATAGAAAAGGACCAAAAATATTATAACAGAAACTGAACAAAGCCAAACATTTTCAGAGTTACTTAAATcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121354 lncRNA upstream 25809 12107808 ~ 12109471 (+) True G90188
TU121320 lncRNA upstream 116938 11992754 ~ 12018342 (+) True G90159
TU121294 lncRNA upstream 154971 11970116 ~ 11980309 (+) True G90139
TU121268 lncRNA upstream 366009 11768358 ~ 11769271 (+) True G90117
TU121094 lncRNA upstream 557928 11548096 ~ 11577352 (+) True G89995
TU121398 lncRNA downstream 59659 12198521 ~ 12198797 (+) True G90227
TU121417 lncRNA downstream 147572 12286434 ~ 12290091 (+) True G90245
TU121510 lncRNA downstream 229981 12368843 ~ 12372236 (+) True G90321
TU121587 lncRNA downstream 370020 12508882 ~ 12509377 (+) True G90370
XR_002650412.1 lncRNA downstream 391178 12530040 ~ 12530995 (+) True LOC111193294
XM_022673562.1 mRNA upstream 74744 12054190 ~ 12060536 (+) True LOC111193331
XM_022673560.1 mRNA upstream 102851 12024708 ~ 12032429 (+) True LOC103037827
XM_007249708.3 mRNA upstream 197945 11931967 ~ 11937335 (+) True LOC103029811
XM_007249728.3 mRNA upstream 788981 11339080 ~ 11346299 (+) True LOC103035108
XM_007249729.2 mRNA upstream 819908 11314243 ~ 11315372 (+) True mc2r
XM_022673567.1 mRNA downstream 2826 12141688 ~ 12147479 (+) True LOC103025286
XM_007249690.3 mRNA downstream 2829 12141691 ~ 12147479 (+) False LOC103025286
XM_015605913.2 mRNA downstream 3259 12142121 ~ 12147479 (+) False LOC103025286
XM_022673570.1 mRNA downstream 57524 12196386 ~ 12198433 (+) True LOC111193332
XM_007249680.3 mRNA downstream 154323 12293185 ~ 12308174 (+) True LOC103022359
TU120940 other upstream 1228108 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 1446460 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 1449224 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 2525026 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 3885846 8246214 ~ 8249434 (+) False sumo1
TU121367 other downstream 16035 12154897 ~ 12156862 (+) True G90199
TU121747 other downstream 805966 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 2133202 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 3021353 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 3137391 15276253 ~ 15279164 (+) False LOC103025288

Expression Profile