RNA id: XM_015605913.2


Basic Information

Item Value
RNA id XM_015605913.2
length 1790
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103025286
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12141688 ~ 12147479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tactccacacacacacacacaggctctgtttacagcagcagcaggcctGAGACCGTCCGGACTCAAACACCTGTACCCTACAAACAGCTGTTAGAAACCTGAACTCCTGTTAGAAATTGGTATAAACGTGTAGGAGCGGTTAATAGATGTTTTGTTTAAAGGCGCAGAGTTTTCTCAGTTTCCTGTCGGGCCAGTTTCCGTGTTCTTCATGCTGTTAGCTAGTTAAACATCCAGCTGGTTTGGTTTCAGGGAAACCTGAGCAACATAGAGAAAGGAGGAAATACGAAAAGTGGGTAAATGTAATCCCATGGACGATGCTTTGAGAGATGGACTTTGATGATATTTAATCAACCACTGCTAAACTGAATAGACGACCATACCAGAGCAGCACATCTTAATTCATCAGGATGTCTGAGACCCTTCCTGCAGATTCGGAGGCAACGGTCAAGGGCCCTCTAGGAGTGACAGCAGGAGCCGATACACCTGGTTGGTCACCAGAGGAGGAGAAGATGAAGACGGATGTGAGCGGAATGGAAGGAGAGGACAGAATTGTCACCAGTGCCCATATGGAGCCAAGTACTCTGCAGTATCCTGGAGATAAGGCTAATCAACCTGGTGGGACGGAAAACGAGAAAGGGTCTGATCTGAAACTAGACAGCAGCGAAACCGATGTTGCGGCAGAAGAAGCAAGTGTGAGATCAGATTGCGCGTCGGTCCGTGGAGGACCGAGCAGGacggagagcgagagagagtttggagtgagagagaagcagGAGGAGGGTGAGGAGTGGATGGAAAAAGATGCCCCTGAGAAGGAAAGGGAGACGCACTTGGAGATCGAAGTGGAAGAGCTGAATGCCATGCCAGAGAAAGCAGCAGGAGTCTTTGGCCCCAGTGTAACTGTCAATCACTCCATCATATCTGAACCACTCAAACAGAATGGAAATGACTGGGAGGAAAACACAGAGAGGACCGCCTTCCTCAGGCCTCATGGAACACCACCTGATGGGTACTACAACAAGAACATGGACTATGATTATGACTACTCCAAGAACAACAAGCAGTGCTgtggATGTACTGGAACAAACCGTGATGTGCTGAAAATGGGCGTGTCTATATTTATGTCAGCCTTGATATTCCCTGTTCTGGTGTGGGGAGGCCACACTTTCCTACCCTTTGATGCTCCTCTGCTggatagcgcccccttgaggctgGTCTACACGCTGCGCTGCTCAGTTTTTGCAGTTATTCCAATTGTGCTGGGTATGTTGGTGCTGGGCGTGTCCCGTCTGCGGTACTGTTCTCTGAAGCCTCGGTGTGACGGAGAGCCTGAGGTGGAACAGGTGAACATCCACCGCCGCTATGTGGATGACTCCATCTCCCTCTTCCTCCTGTACTTCCTGCAGTTGGGGGTCATGGCTGCCTATCTTAATCAGAACCTGCTTAAACTGGTTCCACTCCTCACCATCATCTTTGCATTTGGCAGGCTGGTGTACTGGATCGCAGCTGCATGGGGCAGCAGTGTGAGAGCATTCGGTTTTGGTTTCTCCTTCTGGCCGATGCTGACGATGCTGGTAGCCAACCTTTACTTCATCTTCATGGCCGACTCTGCAGGATCAATCTTCGCTCCAGATGAGATTGATCCTCCTGAAACTTCTCCAGAGCACAGGCAAAGGTTCTGGGGTTAGAGGAGCATCAAGTAACGGGAGAGGTGTTTACTCCATTatattgtttctatttttttagactAGTTTTTTACAGAACACACATTAAAGCTTTACATACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121354 lncRNA upstream 32650 12107808 ~ 12109471 (+) True G90188
TU121320 lncRNA upstream 123779 11992754 ~ 12018342 (+) True G90159
TU121294 lncRNA upstream 161812 11970116 ~ 11980309 (+) True G90139
TU121268 lncRNA upstream 372850 11768358 ~ 11769271 (+) True G90117
TU121094 lncRNA upstream 564769 11548096 ~ 11577352 (+) True G89995
TU121398 lncRNA downstream 51042 12198521 ~ 12198797 (+) True G90227
TU121417 lncRNA downstream 138955 12286434 ~ 12290091 (+) True G90245
TU121510 lncRNA downstream 221364 12368843 ~ 12372236 (+) True G90321
TU121587 lncRNA downstream 361403 12508882 ~ 12509377 (+) True G90370
XR_002650412.1 lncRNA downstream 382561 12530040 ~ 12530995 (+) True LOC111193294
XM_022673566.1 mRNA upstream 3259 12135279 ~ 12138862 (+) True LOC103025787
XM_007249692.3 mRNA upstream 3259 12135280 ~ 12138862 (+) False LOC103025787
XM_022673562.1 mRNA upstream 81585 12054190 ~ 12060536 (+) True LOC111193331
XM_022673560.1 mRNA upstream 109692 12024708 ~ 12032429 (+) True LOC103037827
XM_007249708.3 mRNA upstream 204786 11931967 ~ 11937335 (+) True LOC103029811
XM_022673570.1 mRNA downstream 48907 12196386 ~ 12198433 (+) True LOC111193332
XM_007249680.3 mRNA downstream 145706 12293185 ~ 12308174 (+) True LOC103022359
XM_007249676.2 mRNA downstream 165257 12312736 ~ 12333793 (+) True LOC103021300
XM_007249830.3 mRNA downstream 192462 12339941 ~ 12360647 (+) True LOC103037179
XM_022673580.1 mRNA downstream 240424 12387903 ~ 12424217 (+) True dcst1
TU121370 other upstream 3483 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 1234949 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 1453301 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 1456065 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 2531867 9602771 ~ 9610254 (+) True G89453
TU121367 other downstream 7418 12154897 ~ 12156862 (+) True G90199
TU121747 other downstream 797349 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 2124585 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 3012736 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 3128774 15276253 ~ 15279164 (+) False LOC103025288

Expression Profile