RNA id: XR_002650412.1


Basic Information

Item Value
RNA id XR_002650412.1
length 385
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC111193294
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12530040 ~ 12530995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGCGGAATATCAGTGCTTGTTTCCGATGGCTGTTCTTGGAGGCCTTTCACTTCTTCTGATCATCTTAACAGTCACATTAATGTGCATCTGGCAGAGGACAGGTATAATAAAGCATCAGAAGAACAACAGTGCATCTGAAGAACATCAGCAATCTTCAAGTGAGGTGCAGTATGCAGCCCTGAGGTTTGGAACTAGAAGGTAGACTGGCATCACAAGTTCCTGAGTGTTAAATGCTTCTGTAATTACTTTAAGTTAAGCAAAATTCTGAATgctatgagtttttttttttcatcatgttGTTTCAAGCAGTCTCCTTGTGCAGTTTTTAATTTAGGCCTTAatgaaaaattttttttaaagaaaagtacttttaaaagttTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121587 lncRNA upstream 20663 12508882 ~ 12509377 (+) True G90370
TU121510 lncRNA upstream 157804 12368843 ~ 12372236 (+) True G90321
TU121417 lncRNA upstream 239949 12286434 ~ 12290091 (+) True G90245
TU121398 lncRNA upstream 331243 12198521 ~ 12198797 (+) True G90227
TU121354 lncRNA upstream 420569 12107808 ~ 12109471 (+) True G90188
TU121596 lncRNA downstream 1355 12532350 ~ 12541876 (+) False LOC103044318
TU121602 lncRNA downstream 70507 12601502 ~ 12602261 (+) True G90382
TU121690 lncRNA downstream 196370 12727365 ~ 12741544 (+) True G90452
TU121701 lncRNA downstream 261517 12792512 ~ 12792983 (+) True G90459
TU121740 lncRNA downstream 378365 12909360 ~ 12997600 (+) True G90488
XM_007249667.3 mRNA upstream 17105 12505041 ~ 12512935 (+) True nudt17
XM_022673588.1 mRNA upstream 25912 12492664 ~ 12504128 (+) False LOC103045643
XM_022673586.1 mRNA upstream 25912 12492709 ~ 12504128 (+) True LOC103045643
XM_022673587.1 mRNA upstream 25912 12492714 ~ 12504128 (+) False LOC103045643
XM_022673585.1 mRNA upstream 39654 12483951 ~ 12490386 (+) True LOC103029364
XM_007249663.3 mRNA downstream 1306 12532301 ~ 12552772 (+) True LOC103044318
XM_022673589.1 mRNA downstream 26015 12557010 ~ 12585238 (+) True thbs3
XM_007237731.2 mRNA downstream 60063 12591058 ~ 12599849 (+) True hfe2
XM_007237732.3 mRNA downstream 76293 12607288 ~ 12610047 (+) True LOC103036326
XM_022673590.1 mRNA downstream 110426 12641421 ~ 12665395 (+) True ankrd34a
TU121367 other upstream 373178 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 391402 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 1622868 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 1841220 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 1843984 10685657 ~ 10686056 (+) True G89805
TU121747 other downstream 413833 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 1741069 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 2629220 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 2745258 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 2750514 15281509 ~ 15283055 (+) False LOC103025288

Expression Profile