LOC103029682


Basic Information

Item Value
gene id LOC103029682
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12473174 ~ 12482562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673584.1
AAGTATCATTCaagagaattatttttttactttcagagAAGAAGTGCTGGTGTAATGACTTCCTCTTCCCTTCACAGGAAGACACAGGCACggggtgtttcagttttattgtacaGGTATTGTGAAGACTAAGAGCTAAACTGAAGAACACATGCTGGTTGCACACAGTCTTCTCATGTCCATGCCGACTATGGCAGGAGGGTATCGAAGCTGGAAATTTTGCTtcctacttttaggacttttgCACTTCACTCAAAGTTCCATCTCTCCACGGACCACCTTcctcacagGAAACCCAGGCCGAGTGTTATCTCTGTACGATGTCTCTGATGCGCTGAACACCACAGTACTGCTGCTCAGTCCAGATGCTACAACCCTGTTTGCTGGTGCTAGAAACGCTGTGCTTTCATTGGACGTCAGTCAGCCTGATGTCATCACACTGAAAAGAAAGcatgACTGGGCACCAAAGGATGCTCGAGATAGATGTGGGACCGACCAGCTGaagAATTGTGCCAACTTCATCCGCGTCTTGCAGTTCATCAACTCTACTCATCTGTACACCTGCGGGTCATTTGCTCTCAAACCTCATGACATAATCCTTACTGCAGATACCCTGTCAGTCAGCAGGATCACTCAGTCTGCTAAAGGTCGCTGTCCGTATAAAGGATCTGAGAGAAACACAGCTGTTTTTGTTGATGGAGAGCTCTATACCGCCACAACAAATGACTATAGTGGAAATGAACCCATTATTTCACGCCATTTCAGCAAAGAACCGAAAAATGACCTCAGTCTTGAAAAGTTGCAGAACATACTCAATGAACCTACATTCATCAGCTCCTTCTACACCCCTAGTGAGGGGAAGGTGTTCTTATTCTTCAGGGAGGACGAAGCAGAGTACAACTTTATGCAACGATTCACTGTATCACGTGTGGCACAAGTTTGTATAgatGACAATGGAGGGCAACGTGTCCTTCAGAAGCGCTGGACAACATTTGCTAAGTCTCAGCTTGTGTGCCAAAGGGAGAAACAACTGCCCTTCAATTTGCTCCAGGATGTCGTGATGGTGCCACCACCAGAAGGCGAATCACCTGATAAAACCCTGTTCTATGGCATATTTACATCTCAATGgctATCTGGTCAGTCTGCAGTGTGTGCTTTTACACTAAGAGACATTAAAGCAGTGTTCTCAGGAGACTACAAGACCTACAGTTCAAAAACCAACCAGTGGACAGTCACACCTAACACAGATGCCAAACTGGGCAAAtGTGGGTTACATAATGGCAGTGACGACTTGCTGAACTTGGCGAAGAAGAACTTTCTGACTGCTAAGCCTGTGAAGTCTGTGGATCAGAAGCAGCTTCTTACAGCCACAGAACAGCTATACAGTCGAATCACAGCTCAGAGAGTCCAGGCTGCTAATGGCCACACCTATACTGTCCTCTACCTGCTTACTGGGACTGGATTCCTACAGAAGGCTGTACTGCTAAAAGACAGAGCCCATATTATTGAAGAGATTCAAGTTTTTAAGCAACCGCAGATCCTCACAAGTATACTTCTGTCTGCAACAAAGGGTATGGTGTTCGTGGGCTTCTCTGAAGGTGTGATAAGGGTCCCTGTGTCGAACTGCTCCTTCTACTCGAGTTGTGCAGAGTGTGTGCTGGCACGAGACCCATTCTGCGGCTGGGACTCACAGGGGAAAGGCTGTGTTCCAGTCTCCAACATGTATTCCAGCTTACATCAAGATGTAGAGAATGGGAGTGTTAAAGAGCAATGTGAAGACTTGGAACATCAGAATGACACACCTGTCCCAAAAGTGGTACGGGCTCATCTTAACCGGTTGGTGAAGCTGCCGTGTCACTCAAGCTCCCGACTGGCAAAAGTAAGCTGGAGGTTTGCTAATCACAGCACTGTGCCTCAGACCCGCTTCCTGCAGCATGGAGACGGCAGCCTGGTCTTCCGTGCCACCCCCAGCAACGCCCTGGAGTTCCAGTGTGTTACTGAAGAGCAGGGATTTCAGAAGATTGAAGCGATCTTCTCTCTGAAGGTGCAGGCTTCCCCGCATTCCTACATCACTGCACAGCAGCATGGTGTAGAGTTGGAGCTGATGCCTCAACCTCTTTTGGACAAAGACACACCTCAAAAGACCTACTATAATGAGATGGTTGCGCTCTCCTTTCTGTTTGTTGTGGCTCTCTGTGTGATCGCTGTCGGTGCAGTTCTGTGGAGGAAGAAGAGTCAAAATAAACCTGTTACTGAATATGCAACTAATGAAGATTTCTCCATTGAAAGGAGTGTTACAACaccttaaataaaagtatttaatagTTAAAAGAACCTAGagatttacacaaacacacacactgtagttacatcttaaatttactgtCATCTGACCAATTGCAACATGAACCATGATGCTCTAATTTGGTCTTTGGTG

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673584.1 True 2437 mRNA 0.46 14 12473174 12482562

Neighbor

gene id symbol gene type direction distance location
adam15 adam15,LOC107717790 coding upstream 1144 12425639 ~ 12472030 (+)
dcst1 NA coding upstream 48957 12387903 ~ 12424217 (+)
LOC103037179 LOC103037179 coding upstream 112527 12339941 ~ 12360647 (+)
LOC103021300 LOC108436571,LOC108267614 coding upstream 139381 12312736 ~ 12333793 (+)
LOC103022359 LOC103022359,LOC108436572,LOC108267606,LOC107549232,LOC107741768,LOC107597968 coding upstream 165000 12293185 ~ 12308174 (+)
LOC103029364 NA coding downstream 1389 12483951 ~ 12490386 (+)
LOC103045643 si:dkey-7j14.5,LOC108436563,LOC108269355,LOC107666850,LOC107719133,LOC107592309,LOC107686177 coding downstream 10102 12492664 ~ 12504128 (+)
nudt17 nudt17 coding downstream 22479 12505041 ~ 12512935 (+)
thbs3 thbs3,thbs3a,LOC107666739,LOC107719129,LOC105896172,LOC106605431 coding downstream 74448 12557010 ~ 12585238 (+)
hfe2 hfe2 coding downstream 108496 12591058 ~ 12599849 (+)
G90321 NA non-coding upstream 100938 12368843 ~ 12372236 (+)
G90245 NA non-coding upstream 183083 12286434 ~ 12290091 (+)
G90227 NA non-coding upstream 274377 12198521 ~ 12198797 (+)
G90188 NA non-coding upstream 363703 12107808 ~ 12109471 (+)
G90159 NA non-coding upstream 454832 11992754 ~ 12018342 (+)
G90370 NA non-coding downstream 26320 12508882 ~ 12509377 (+)
LOC111193294 NA non-coding downstream 47478 12530040 ~ 12530995 (+)
G90382 NA non-coding downstream 118940 12601502 ~ 12602261 (+)
G90452 iqgap3,LOC106605450,LOC105031059 non-coding downstream 244803 12727365 ~ 12741544 (+)
G90459 NA non-coding downstream 309950 12792512 ~ 12792983 (+)
G90199 cct3 other upstream 316312 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 334312 12135279 ~ 12138862 (+)
LOC111193328 NA other upstream 1566002 10903683 ~ 10907172 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other upstream 1682046 10780102 ~ 10791128 (+)
G89806 NA other upstream 1784354 10688266 ~ 10688820 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other downstream 49739 12532301 ~ 12552772 (+)
npy npy other downstream 462224 12944786 ~ 12948250 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other downstream 1789433 14271995 ~ 14274698 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 2163236 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 2180095 14662657 ~ 14773367 (+)

Expression


Co-expression Network