G90952


Basic Information

Item Value
gene id G90952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14965859 ~ 14968245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122329
GTTCTACAGCGTCTCCGTGCGTGTTTAACTGTGTCCGGGActtcagacagagagacaggggagagagAGGGTTGGGCTTACCCGCGGCCTGCTGCCTCCGCTCCTGTCCGCTCCGCTCCTCCTGTCCGCTGTACTCAGCAGCAGCGCGGTCCACTCCAGTCCTCCTGCGGTTCGGTTCCGTTCAGTTGaatctctgttttgttttgttttgttttgttctgttttgtggaagaaataacagaaaactCTACACGCCACTGAACCCCGGAGTCTCCGCCATGAGGCTAAACAAGCACTAATTAGTCTCAGGTAAGTGACGCTACCTGCGCCCCTGACCACGTGACCTACCTTACCTAACACACCTACAATAGACCCAAACAGGTTAAGTCAATCCGGgtgTAAAGAAGGAGTGAAGGTTCAGGTCTTAGGAAGAGGAGCTGAGGACACACTCACAGAACTCAGACtcaaagaagagagagaaaaatagagatacaaGAACAGAACTGAAGATCAGCTGCTGAATCGGTTGCAGGGCCTGCAGAAAGAAAATCTGAAGTCCTGgatgcaaaacacaaaaaccttaaaattaatatatatatcaccATGTTTTCTGTTGTATAATATCAGCTATATAGGTGGTAGATATTATTTGTTCAAATCAAAATGTACACAATGATACGCACAGAGTATTTTATCTGCAAATGTTTCATAGCAAGCTAATTCATCACTCACACTGACACAATACACAATGTCTACACatgtattatactgtactgtactgtcttTATAATAAGTGTAGCAGATAATAAAGCTGTGTCAACAGTTCTCCTAGAAAAAAGGGCTTCAATCTGATATTTCCTCACTTTAATGAATAGAGAGCAGCTAAAAGCTCTCAGTCAAATCAGTATTTCCTTTCTGTTTGTGACTGAGTGGAATCAGACTGCTGTATGTGTTGTAATTTAGCAGTGGAGGGCCATTTGGAGAGAGCTATTAAAACCAAATGATATTACTGAAGCCAAAACACACGGTTAATGAGAGCAATTTACAATCGATGGTCTTAAATCATTACAGCTACGTCTCATTCTGAACGTTCAAATGTTTTGTTACGACATTTCTGTACcaataaaaatctgtttttactgATTA

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122329 True 1146 lncRNA 0.42 3 14965859 14968245

Neighbor

gene id symbol gene type direction distance location
LOC103046458 mmp16,LOC108428959 coding upstream 4133 14872891 ~ 14961726 (+)
steap2 steap2,LOC107555016,LOC107657773 coding upstream 72142 14734892 ~ 14893717 (+)
LOC103045139 LOC108428921 coding upstream 232282 14726988 ~ 14733577 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding upstream 326806 14590842 ~ 14639053 (+)
cubn cubn,LOC107677149 coding upstream 377731 14533600 ~ 14588128 (+)
LOC103021625 LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319 coding downstream 97847 15066092 ~ 15075982 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding downstream 108103 15076348 ~ 15094963 (+)
abcd3 abcd3,LOC107677270,LOC107712812 coding downstream 161978 15130223 ~ 15144305 (+)
LOC103022978 LOC108428965 coding downstream 177113 15145358 ~ 15155018 (+)
cnn3 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107739018,LOC107657766 coding downstream 254578 15222823 ~ 15234815 (+)
G90946 NA non-coding upstream 49833 14914063 ~ 14916026 (+)
G90941 NA non-coding upstream 104150 14861342 ~ 14861709 (+)
G90836 NA non-coding upstream 451684 14513451 ~ 14514175 (+)
G90818 NA non-coding upstream 608165 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 743589 14221013 ~ 14222270 (+)
G90994 NA non-coding downstream 38775 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 50641 15018886 ~ 15019404 (+)
G91009 NA non-coding downstream 134127 15102372 ~ 15103131 (+)
G91036 NA non-coding downstream 153613 15121858 ~ 15123493 (+)
LOC111193336 NA non-coding downstream 254890 15223135 ~ 15224692 (+)
LOC103045856 NA other upstream 192492 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 313577 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 691161 14271995 ~ 14274698 (+)
npy npy other upstream 2017609 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 2413087 12532301 ~ 12552772 (+)
alg14 alg14,LOC107739035 other downstream 191970 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 307897 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1426969 16395214 ~ 16419380 (+)
rcc1 NA other downstream 2390594 17358839 ~ 17447933 (+)
G91678 NA other downstream 2943656 17911901 ~ 17912443 (+)

Expression


Co-expression Network