LOC103046458 (mmp16,LOC108428959)


Basic Information

Item Value
gene id LOC103046458
gene name mmp16,LOC108428959
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14872891 ~ 14961726 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250375.3
CGCATGCGCAGAAAGGCAGGCGATGGTTGAAAACTAGCAGCTATGCCGCTGAGCAGACGAGCCTAACTCAATGGTACTGATCAGAGCATCCGACCCGCACACGCTGGAGGCCGCCGTGCAGCTCGTTCCGCGCACGGCCAGGAGACACAGCTCGTGTGGCCAGAGCTCGCAGGCTTCTCCGGGTTTCTCTCCAGCAGCTCGACGgctcctccattcctcctcctcctccccctcctccttctcctcctcctcctcctcctcctctttctcttcctccggCTCGGCAGCGGTCGACACATCCTCCCAAATGTTGCCATCCTACTGAAGCGCGGGGATTTACTCCTTCCAGCGGCTTTACTGACTATTAACACACAGACCCAGGGTACCCCGAGCCTGAACGCGGGTCGCTATGTTTTTGTTACCGTTCCAGCCCGCTCGGAGGCGTGTGAACAGCTTGTGTCCGGGGGCGTTGTGCCTGCACTTCATGCTCTGGATTGTATGTGCTGTTTGCGGAGAGGAGCAGCCGTTCAGTGTGGAGGCATGGCTCCAGCGGTATGGTTACCTCCCCCCCACAGACCCCAGAATGTCTGTCCTGCGTTCGGCGCAGACCATGCAGACTGCTATCGCTGCCATGCAGCGGCTGTACGGCCTCAACGTCACCGGCGCTCTGGACAAGAACACCATCGACTGGATGAAAAGGCCCCGGTGTGGGGTACCAGACCAGCTTGGCGGTGCCTCTAAATTCAGCGTACGGAAACGACGCTACGCTCTCACGGGACAGAAGTGGCAACACAAGCATATCACATACAGCATAAAGAACGTCACACCCAAGGTGGGCGCAGAGGAGACCCATGATGCCATCCGTCGAGCGTTCGAGGTATGGCAGAATGTGACGCCGCTGCGCTTCGAGGCTGTTCCCTACAGCGAGCTCGAACGGAATAAGAAAGATGTGGACATTACCATCATATTCGCCTCCGGATTCCACGGAGACAGCTCTCCCTTTGATGGAGAGGGGGGCTTTCTGGCACACGCTTACTTCCCTGGGCCGGGCATCGGGGGAGACACACACTTTGACTCAGACGAGCCCTGGACTCTGGGGAACCCCAACCACGATGGGAATGACCTGTTCCTGGTGGCCGTGCATGAGCTGGGCCATGCGTTAGGCCTGGAGCACTCCAATGACCCCACAGCCATCATGGCCCCTTTCTACCAGTACATGGACACAGAGAACTTCAAACTGCCTCACGATGACCTGCAGGGTATTCAGAAGATATACGGACCACCAGACAAGCTCCCTCAGCCTACAAAGCCTTTACCAACAGCGCCCCCTTCCCGCTCACACCCTCCCGCAGACCCCCGCAAACACGACCGTCAGACACGGCCCCCACGCTTACCCACGGGGGACAAGCCTTCACATCCGAACGCCAAGCCCAACATCTGCGACGGAGATTTCAACACGCTGGCCATCCTACGGAGAGAGATGTTTGTGTTTAAGGATCACTGGTTTTGGAGGGTGAGGGACAACGCAGTGATGCCAGGCTACCCCATGCTCATCAACGTGTTCTGGAGAGGTCTGCCGCCCAAGATAGACGCCGTCTACGAGAACAGCGAGGGGAAGTTTGTCTTCTTTAAAGGGAAGCAGTTCTGGGTGTTCAAGGACACCATGCTCCAGCCTGGCTACCCAAAGGACATCTCCACGTTTGGGAACGGCATGCCAGCACAGAGTATTGAGACCGCCGTCTGGTGGGAAGATGTAGCCAAGACCTACTTCTTCAAAGGGGACAGGTACTGGAGATACAATGAAGATATGCGGACCATGGATCCTGGCTACCCAAAGTCCATCACAGTGTGGAAGGGCGTTCCACCTTCTCCTCAGGGTGCCTTCGTAGACAAAGCCAACGGTTTCACATACTTCTACAAAGATAAAGAATACTGGAAGTTCAACAACCAGAGACTGCGGGTGGAGCCAGGCTACCCTCGCTCCATCTTGAAAGACTTCATGGGCTGCGACATGACTCCCATCGATCCCGACCGCCTCCCCAACGAGGACGTGGACATCGTCATCAAGCTGGACAACGAAGCCAGCACGGTCAAAGCCATCGCCATCGTCATCCCCTGCATCCTGGCGCTGTGTCTGCTGGTGCTGATCTACACTGTCTTTCAGTTCAAGAAGAAGGGCACGCCCCGCCACATACTGTACTGCAAACGCTCCATGCAGGAGTGGGTGTGAGGTAGAGCCCTGCCCCGTGTACTCCCACCAACCCCGGCCAACGCCGCGGTGGTACAGCCCACCTTAAAACCTGCAGACTTACGGCCCtgacctcactctgtctcactccgGCTGCTGTGGGGAGCAGAGAGGGCCTTTGCCTAGATCTCCCCCCTCCAGGAGAGGAAGGGTGCATTATTTCTTACTCCCAGCCCCTCTCCCATTGACTCAGTGCGCCCGCTCTAAGACTAGGGAGGGTTTCAGACCAGACACCTCTCGCGGTGCACTGCGTCGTCCTGCGTCAAATCAGGTCTTAACTGTTCTAAGTGGAAACAAAGCTGATTGCTATATCTTTAGGTTTTACTCCCAACTGCACgagagaaacaaaagaaaacaaagaaacaagccCATCTTAAAGTTGCTGGAATTCAACAAGTTGacatcttttccttttttttttttagcctttttatttgatttaatccataatttattttttggaacCGAGGTATTTTACGATTCCCTTTAAGCAGTCCTGAAGAAGACAGCCCAAACCAAATAAAGACTTCTTTCTCTCcaaagaggatttttttttataaatatataattttttttgtttgtttttgttatcactttctttactttttccTCCTTGCTCTTAATCTTCTGTAGTGATGATAAGAAGTGGGGAACTCTTGACTGTTGTGGCAGTCTGTCTCAGAAACAGGGGCcaaaatattttgcaatatttttaacagCCTTAATTATAGATTGTGTTCTTCTCGTTTTgctctttctttgttttgtttaattttggggTTTTTATTCCAGTTTTGCTTCGTTTGTTTGTCGGCAAGCCAGTGAGTGGCGTCCATTGCTTTGCTCCGTTTGTCCTACCTGTGATTGACCGGCCACACTTAACCAACTTGGCCAGAAGCCTCTTCGCAGGTCTGCCAAGCTGCTGGAGCAGGGGCGAGCGGTCAGTCTGCACTTAAAGTGAAATTTATATCAGTGGAAGCAGAGAGAATAGGTTCAAGCCACTACACGAGCTAATGCATTACTGCGGCTATCTGACGTTACTGTCGGATGTCCGCCTATCAGTGGAAATGCGACATTAAAGGATAAAGTGCTTGAAGTGCTATAGTGCTTTAGAACATCACTCACTCGTTTGTCCATGTTTACCTGCCCCAGCGACCCAGCTTGGAGCTTTGGTGCTCCTGTCCGATAAGGAACTCTGCTGACTCCAGGTCAGCCCAGTGTGTCATCTCTTCTGGACTGCCTTGTTTTAGGGGAGGGGCGGTGGTGGTAAAATTCCCAGAGCCTTGGCACACACTGCACAGGGGCTTCATCCCAGGACCCATGAGAGCAACACCTCAGGACAGTGCTTGTGTGCGAGGGGCGTACGAGCATTCATGTCTACATTTGTGTCCTCCAACTGACCTGAGAGGACAAAGAAAAGgaacttttaaaaaagaaaaaaagaaaatgcctAGGTTGTCATGTTAGGTTTTCAAATAAGATTTTCTGGACGGAACCAGAACTCTTAACAGCGCCTTGCGGCATGCAACTTGAACTGGGAGCTCAGCCTATTGCATTAGAGGGACATACAGTACCTtgcttgcatttatttttttgtgttttcttttctggtacattacaaaacaaacaatgaatGATCTCAACCTCAAGGTACAAGCGGTACTCAAGTGAGCTGAGCTATCATTAAGCATTCTTTTCTTGGCTGATACTGATCATAAGcggtattttttttctttcttcagatCATTCTAGTTGAGTGGTGAACATGTCATTGCTGTTTGGCCAGCATTGTTTGAATGCGTGTCTGTCacgttattttttattatgattattgttattattcatTTGAGAACAAATGAGACATTTCCAAGTTCATGTAAGACTCAAAGTTCATGGGACGATGGATCAGTCCTGacagaaataataaattgaTTGACATAAATGGATTTACGTTCTTTGGATATATTTATacccttttttccccccaacAGAGCAAAAACCAAAGTGCCTTTTTAATAGAAGCCTTGCTTTGATTTTTGCTCTTGCTTAGACTATTTCTCACTGCCttagtttttttgtcttttttttttttttttttacttacctGCCTCTTTACTCAGTCGGTCTGTCggtttctctctccttctttcttcgCATGTTCGCACGCATATGCATGAGCACAGCTCAGTATTTCCCAGAACCTTGGTAgacaaaaaataacagaaacagaCCATCATCATGTTTATGTGGGAAATACCGAGACCAAAAGCTCAGCCTCTTAATGGTATTGTATGTCATGcggttatatttaaaatttgatAAGAATCAGAGTCAAAAAtgtaaacacagacagacagacatgctTGTTCTGACTGCCACTGACCACTAGCTGTGGACTAAAGAGGCTGTTTTTAGCTTTtgggggtaaaaaaaaagttaaatccaGCATGACTCTACAGTGGCACTGATTTCAGTCTATATTTACACTGGCTACAGTGGCTGTGGCAATAGACCATCAGTAAATGAGCTATTATTAGTTTCTACAGAGCTCATTTCTGAACATTACAAGGTCTAAGGCCTTTGACATATTACTGTTTTTGCCTCTCTTATGACCAGCAAGATTAATAAGCTTTTAAAGGCAGGACAGGCTCGTTTCTGGTTtgtgagagaaaagaagaattgGTGCTAACTTCACCTACACTGGCAAAGTAACTGTATGGTGCTGTTCTCTTCTTTAATCCAGTATGGATTTACACTTGAGTGATTGTGGTCTGAGCAGGAATAATGCGCCTTCCTTTAGCACTAATCCTTATTGTGTATCGGTCTAATGGCTCACAGTTAGCAGTTAGCAGATATTTTTACTTGTTAACGATTTAAGGGGTCATTCATCTTGAACAAGCTCTACATTTTGAGCAAGCACACACTGATCCTGTCTGTTTATGCAGACAGAAATGATCAGACTATTGTTGCTGTGTCAAAATATCATCCATTTCCAacagtgtcattttttttttttttttttaacagaaccttgctctttttttttcgaCTCATCTGTGGTTGATACTCTTCATGTTCATTCTCATGTTCATTCATTATCTATAGTTGTTTTAATAGACATGTGTTTACTTTTTACATACGGGACTGTTACGACAATGGAGGGGACTATTGAGAATAGAAGTCTTTTctaccattttttaaaaatctgtctTTGGCATCACTGTTTCTTTGTGCTGTATCTTTTCAGGATCCATTTCGTTGAccaataaacacatttcaacATA

Function

symbol description
mmp16 Enables metalloaminopeptidase activity; metalloendopeptidase activity; and zinc ion binding activity. Involved in protein processing. Is integral component of plasma membrane.

NR:

description
PREDICTED: matrix metalloproteinase-16-like isoform X2

GO: NA

KEGG:

id description
K07996 MMP16; matrix metalloproteinase-16 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250375.3 True 5532 mRNA 0.47 11 14872891 14961726

Neighbor

gene id symbol gene type direction distance location
LOC103045139 LOC108428921 coding upstream 139314 14726988 ~ 14733577 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding upstream 233838 14590842 ~ 14639053 (+)
cubn cubn,LOC107677149 coding upstream 284763 14533600 ~ 14588128 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding upstream 339517 14522872 ~ 14533374 (+)
ppp1r17 ppp1r17 coding upstream 539066 14331398 ~ 14333825 (+)
LOC103021625 LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319 coding downstream 104366 15066092 ~ 15075982 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding downstream 114622 15076348 ~ 15094963 (+)
abcd3 abcd3,LOC107677270,LOC107712812 coding downstream 168497 15130223 ~ 15144305 (+)
LOC103022978 LOC108428965 coding downstream 183632 15145358 ~ 15155018 (+)
cnn3 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107739018,LOC107657766 coding downstream 261097 15222823 ~ 15234815 (+)
G90941 NA non-coding upstream 11182 14861342 ~ 14861709 (+)
G90836 NA non-coding upstream 358716 14513451 ~ 14514175 (+)
G90818 NA non-coding upstream 515197 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 650621 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 683466 14186614 ~ 14189425 (+)
G90952 NA non-coding downstream 4133 14965859 ~ 14968245 (+)
G90994 NA non-coding downstream 45294 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 57160 15018886 ~ 15019404 (+)
G91009 NA non-coding downstream 140646 15102372 ~ 15103131 (+)
G91036 NA non-coding downstream 160132 15121858 ~ 15123493 (+)
LOC103045856 NA other upstream 99524 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 220609 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 598193 14271995 ~ 14274698 (+)
npy npy other upstream 1924641 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 2320119 12532301 ~ 12552772 (+)
alg14 alg14,LOC107739035 other downstream 198489 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 314416 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1433488 16395214 ~ 16419380 (+)
rcc1 NA other downstream 2397113 17358839 ~ 17447933 (+)
G91678 NA other downstream 2950175 17911901 ~ 17912443 (+)

Expression


Co-expression Network