trdmt1 (trdmt1,LOC104946219,LOC107555384)


Basic Information

Item Value
gene id trdmt1
gene name trdmt1,LOC104946219,LOC107555384
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14522872 ~ 14533374 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673629.1
TTAAGCTAACCATTAATATTTCAGAGAAATGTTGTATTTGTCCTGCTTATATGCgttttaaatagaataaaaacaggTAAACAGCTGTGATATTTGGTGTGAACTGTGTGTTCTGATGGAGGCAGGAACCGACAGGGCGGAACCTTTATGCGGGAGCGCTGTTTCCAGAGGAAGCGGTGAAGTTCAGCATGCTTTAGCACAGTGAGGTGTAAACATGGAGCAGCTGCGTGTGTTGGAGCTGTACAGCGGCATTGGGGGGATGCATTATGCTCTTACAGagagCTCAGTGCCTGCTGAAGTGGTGGCTGCAGTGGATGTAAACACGACAGCCAATGAAATCTATAAACACAACTTCCCAAACACATTACTCCTACCCAAGACCATTGAAGGAATGACATTAAATGATTTCAATAAACTTGATTTTGATATGATATTGATGAGTCCTCCTTGCCAGCCGTTTACAAGGATTGGATTACAGGGCGATGTGTCTGACCCCAGAACAAAAAGCTTTCTCTACATTTTAGAACTTCTGCCAAGGTTGAACAAACTGCCACGCTTCATTCTGCTGGAGAATGTAAAAGGGTTTGAGACTTCTTCTGCAAGAGATGCTTTGATAAAGACACTGAAGGAATGTGAATACAGTTTTCAGGAGTTAATGGTCTCACCCACAAGTctagGAATACCAAATTCAAGATTGCGTTATTTCCTTATTGCCAAGGCATCCACAGGTTCATTATCATTTCAGACAACATCAGAGATTCTAGAGGGTTTTCCAAAAACATCTTCCAGTGATGCCACAGGCACTCCCACAATTTCAAATACTCACTCTGCTTCCCTGAGTAGTAACATGAGTGATAACAAAGATATCATCTATAAGCTAGAAACAGCTCAGGACctagagaggaagagaagtcAAAACAGTGAGGAGAGCATCAGGAGACtacaggacttcctggaggaggAAGGACAAGAAACAGACATGGACCACTATCTGCTGCCCCCCAAAACCCTGCTTAGATACGCCATGCTCATGGACATTGTCAGCCCAACCTGCAGGAGATCAGTCTGCTTCACCAAAGGATATGGACATTATGTGGAGGGAACTGGCTCTGTTCTGCAGTCCTGCTCAGACGTTGAACTGGAGAGTGTATTTAAGTCACTGGAAGGTCTGTCTGAAGAGGAGAAACTGAAGCAGCTCTCCCGACTAAAGCTCAGATACTTCACACCCAGAGAGATAGCCAACCTGATGGGGTTCCCCCCACATTTCActtttccaccaaatatctccataaaGCAGCAGTACCGGGTCCTGGGAAACAGTCTAAATGTTCATGTAGTGGCCAAACTCATCAGTCTTCTGGTGTCGTGACATGCTTTTTGTGCTCTGCCACAGTTAATGAGGTGAGGCGGGAAAGACCACAACTGGGACTATCTGAAGCTAATCCTGAGAgaccttttgttttgtttgttttatattatgtgaattaaaattgtacattttcaAACAAAATAATGTTGTTTGTTCTATATTgtgttttactgttgtttttgtaaaataccaaatgttcattttttaagtatttctaataaaaactattataaaTT

Function

symbol description
trdmt1 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).

NR:

description
tRNA (cytosine(38)-C(5))-methyltransferase

GO:

id name namespace
GO:0006306 DNA methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673629.1 True 1605 mRNA 0.42 10 14522872 14533374

Neighbor

gene id symbol gene type direction distance location
ppp1r17 ppp1r17 coding upstream 189047 14331398 ~ 14333825 (+)
ccdc129 ccdc129 coding upstream 192308 14316085 ~ 14330564 (+)
LOC103042587 NA coding upstream 252040 14266717 ~ 14270832 (+)
LOC103043509 LOC108428914,LOC108273518,LOC105910609,LOC106023690 coding upstream 266183 14252003 ~ 14256689 (+)
LOC103042889 cblc,LOC103042889,LOC107657700,LOC106577440 coding upstream 275566 14227627 ~ 14247306 (+)
cubn cubn,LOC107677149 coding downstream 226 14533600 ~ 14588128 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding downstream 57468 14590842 ~ 14639053 (+)
LOC103045139 LOC108428921 coding downstream 193614 14726988 ~ 14733577 (+)
steap2 steap2,LOC107555016,LOC107657773 coding downstream 201518 14734892 ~ 14893717 (+)
LOC103046458 mmp16,LOC108428959 coding downstream 339517 14872891 ~ 14961726 (+)
G90836 NA non-coding upstream 8697 14513451 ~ 14514175 (+)
G90818 NA non-coding upstream 165178 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 300602 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 333447 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 517424 14005234 ~ 14005448 (+)
G90941 NA non-coding downstream 327968 14861342 ~ 14861709 (+)
G90946 NA non-coding downstream 380689 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 432485 14965859 ~ 14968245 (+)
G90994 NA non-coding downstream 473646 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 485512 15018886 ~ 15019404 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 248174 14271995 ~ 14274698 (+)
npy npy other upstream 1574622 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 1970100 12532301 ~ 12552772 (+)
G90199 cct3 other upstream 2366010 12154897 ~ 12156862 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other upstream 2384010 12135279 ~ 12138862 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other downstream 112424 14645798 ~ 14652282 (+)
LOC103045856 NA other downstream 129283 14662657 ~ 14773367 (+)
alg14 alg14,LOC107739035 other downstream 626841 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 742768 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1861840 16395214 ~ 16419380 (+)

Expression


Co-expression Network