G90941


Basic Information

Item Value
gene id G90941
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14861342 ~ 14861709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122318
CCcacgctcatgcagctttgccatcaagctgccggcgttagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctctccccacatcacttctatggtgatgtctgcagcacagggcgtctgtgagctggtgtaccggagccgagccgctgtgctttcctccaagcgtgctgtgatgctgcttggcaatgctgcatcagcagcagctcgaaaagaagcggtggctaacttcacatgtatcagaggaagcatgtgttagtcttcaccctcctggtgtgttggggcattactagtgatagggggagtcctaatgagtgggttgggtaattggccgtgtaaattggggagaaaatgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122318 True 368 lncRNA 0.55 1 14861342 14861709

Neighbor

gene id symbol gene type direction distance location
LOC103045139 LOC108428921 coding upstream 127765 14726988 ~ 14733577 (+)
rsu1 rsu1,LOC107677300,LOC107657774 coding upstream 222289 14590842 ~ 14639053 (+)
cubn cubn,LOC107677149 coding upstream 273214 14533600 ~ 14588128 (+)
trdmt1 trdmt1,LOC104946219,LOC107555384 coding upstream 327968 14522872 ~ 14533374 (+)
ppp1r17 ppp1r17 coding upstream 527517 14331398 ~ 14333825 (+)
LOC103046458 mmp16,LOC108428959 coding downstream 11182 14872891 ~ 14961726 (+)
LOC103021625 LOC108258200,LOC107555421,LOC107657742,LOC107739024,LOC108428909,LOC562466,LOC105897216,LOC107590319 coding downstream 204383 15066092 ~ 15075982 (+)
LOC103045456 LOC108428960,LOC107657767,LOC107555432,LOC107739029 coding downstream 214639 15076348 ~ 15094963 (+)
abcd3 abcd3,LOC107677270,LOC107712812 coding downstream 268514 15130223 ~ 15144305 (+)
LOC103022978 LOC108428965 coding downstream 283649 15145358 ~ 15155018 (+)
G90836 NA non-coding upstream 347167 14513451 ~ 14514175 (+)
G90818 NA non-coding upstream 503648 14356600 ~ 14357694 (+)
G90719 NA non-coding upstream 639072 14221013 ~ 14222270 (+)
G90692 NA non-coding upstream 671917 14186614 ~ 14189425 (+)
G90678 NA non-coding upstream 855894 14005234 ~ 14005448 (+)
G90946 NA non-coding downstream 52354 14914063 ~ 14916026 (+)
G90952 NA non-coding downstream 104150 14965859 ~ 14968245 (+)
G90994 NA non-coding downstream 145311 15007020 ~ 15007971 (+)
G90996 NA non-coding downstream 157177 15018886 ~ 15019404 (+)
G91009 NA non-coding downstream 240663 15102372 ~ 15103131 (+)
LOC103045856 NA other upstream 87975 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 209060 14645798 ~ 14652282 (+)
eif1b eif1b,zgc:56676,LOC107657782,LOC107599656,LOC105910901,LOC107712803,LOC105027100 other upstream 586644 14271995 ~ 14274698 (+)
npy npy other upstream 1913092 12944786 ~ 12948250 (+)
LOC103044318 mtx1a,LOC108436561,LOC107719130,LOC107592302,LOC107666872,LOC107686169,LOC107592422 other upstream 2308570 12532301 ~ 12552772 (+)
alg14 alg14,LOC107739035 other downstream 298506 15160215 ~ 15216508 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other downstream 414433 15276142 ~ 15283055 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other downstream 1533505 16395214 ~ 16419380 (+)
rcc1 NA other downstream 2497130 17358839 ~ 17447933 (+)
G91678 NA other downstream 3050192 17911901 ~ 17912443 (+)

Expression


Co-expression Network