LOC103040991 (LOC103040991,LOC108411963,LOC108267159,LOC106597001)


Basic Information

Item Value
gene id LOC103040991
gene name LOC103040991,LOC108411963,LOC108267159,LOC106597001
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 31723235 ~ 31733780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256509.3
TAACTCATCCTCTCCCACCCAtcagcttctctctctcgcgctttgTGCTCCTGCTGATCCAGTGCCTTAACGCGCCCCGCTGACCGGTACCGACCAGAACCCCcgagcaacaccacagcaacatctcagcaacaccacagcaaccgccATGGAGCAGATCGCCGCCGCGTATAAGGAGAAGATGAGGGAGCTATCCATGTTCTCACTGTTCTGCTCTTGCTTTAATCCCAGACTCCACAAAAACCTGGACGTCAACTCAGAGTATATGGAAGTGAAGCCTATAAATAAACGAGCTTCAGGTCAGGCCTTTGAAGTGATCCTCAAGCCCCCCTCGCCGGTGTCAGATGTGGCCCACAACATCGCGTCCATTTCAAAGAAAAGAGACGTCTCTCTGGAGGACATCCAGAAGAAACTGGAGGCTGCTGAAGACCGGAGGAGATCTCAGGAGGCCCAGGTACTGAAGACTTTGGCTGAGAAGCGCGAGCACGAGCGGGACGTCATGATAAAAGCCCAGGAGGAGAACAATAACTTCAGCAGGATGGCTGAAGAAAAGCTCATACTGAAGATGGAGCAAATTGACGAGAACCGCAGGGCCCACATCGCAGCCATGATGGAACGCCTGCAGGAGAAGGAGCGACATGCCGCTGTTGTCCGCCGGAACAAGGAACTGAGAGAAGAACTGACAGCATGAAGTCGTTTTCACTCTCGTCAACACTTCTTTTTTCATCCTgttgttacacacacaaaaaatcacacacacattcgcgCAGTACTATCTAGTAGGTAATTTCAGTATAGTTTAAATGGTCTTGCTCAGTTTCATAGTTTATCACTCATAGATTAGTTTGTAAATacgtaattttttaaataactatcTCTCCATCCGTCTACCAGTCAGTCTGACTGAGCACAAACAAACATCCATTGTATAAAGTCTATCTACGATACAGTGTCATTATCATATGTAGACTTAACACCTTAATCCCTTACAAAACACATATAATCTGCATTATACACCTGCATACACAAGTACACAGAGTATTTAtgctgatatacagtataaacgaCACACTGGAGTACTTTCTTTCTACAACCCGGCTCTGAAACACACCTCGTTCCAAGGATTCTCTTTGATAAATCTACCTTTGAAACGCATTAGACACAAAAAAGGtggtttatgtttaaatattctgATCATCTGCTGTTTACGACCTACTCTTTGGACCTTTTTGAACTAAGTAGTGCTATAAAGTGAAGGGTCACTGATTAGCATTGTATCAATAACTCTGTAGCCTTCTTTAGCAACATCAGCTTTGAAAAACAACTTGCTTTGAAAAAATGGTtcacaaaaaatgtaatttacccAGTTTCTTTGCCTCACCCAAACTATGGTATGGCTTTGGGCCGTTACGTTGCTGTCTGAAGCAAAGGTGGCAttaccttatttttttcctcgtGAGCCTTTGGCTCAAGTACTaggaaaacaacttttaaacaCCAGGCACTAATTGGTTAACGCTTGGATGTGTATTTCAACAAATATTTGGTAGCAGATATTTGGTTTAATGCAGGAAAGAAAGAAGCAAATAACACTAATACAGGcaaagttagcttagctttttagTTGTTAGCACTCGTTTAAGGAggattaaaatatcaaaaacataaaactaagcagggcaagtgTAAAAGACATCTGAAAATATTGTCTGTTTACTGTTTGTGAAGTGCTAAAAGAAACATTTAGGTTTTATTATGAGAGGAGTAACTGAGGCAGCCCCTCATCGCAGCTAATGAGCTAATGCTAAGAGCAGAGCTAACCGAGGGCCACCATcaaagcagctaatgctaataaactAACAGAGGTAAGTCAGTGGATAATGTTAGACTTATTTTGTGAGAGGAAATTGACAATTTTCATATCTTCTCACTGTTTCTGTACCAAGTTAAAAGTACTTTGAAATCATCCTCAAATGCAGTCCCAAAAACATCAacaatgttatgatgaaactggcttttatcaggactgccccagaaaaggaagaccaagagttagcACTAGCAGCTACGGAAAGCGCAAGTTAGCAATGGTAAGCATGTTTCTCTGCGAAGAATGTTAATAAACAGCTGAAAAGTGGAACTCTGAGTGGTTAACCAGGACGTGAGTAACTGTGCACATCCATAGTTTGAGGTAAAGGGAGAATTAAATTGGTATAAATTCGATTTTTTTGTGAACTCTTGCATTAAAATCACACTGAATGCTGAATGGCCAGTCCTTTTTATAGTATTTCCTCATTCCGTAACCTGAAGAGCATGTAAATTCTCCTCTCACCCTGATTCcctgtttgagtgtgtgtttttctgtgtgaataaaaaaaaaaaaaatcttaactcGAGGTTGAGGCTTGCCATCCTGCAGGTCCATCAGACCCAAACCCACTGCAGTTCTGCTGGTGCTGTTTAGAGTCAGATGAATGTCTGTATCCTGACCGTACTGATTTCTGTAATATCTCTGCCGGTCGAATGTACTTCTCCTCCTGACTTCAGCCTCTCCTGTGGATATGAGttttgtgtttgagtgtgtgtttgtgtgtgtgactgagtgagtgaaagagtgtgtgtctATGTTAATTAGGGTGGCCAAGCTTTTGTGACCTTTCTCTTTGGCAGTGAAATGCCAGTGTGGAACAGAATATgcattgaatgtttttttttattgatcacTGTTTCCTCCTGAGATCTGTCTGCCTGCATCTTCTGCTGCGTAAACTGTGTTTCCCTCATTTCTCTGTGTGCTAAATTTGGTAAATAAAGATTTGGGGTTCTGTGAAGGctg

Function

NR:

description
stathmin-2-like

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256509.3 True 2836 mRNA 0.42 5 31723235 31733780

Neighbor

gene id symbol gene type direction distance location
LOC103040159 NA coding upstream 30322 31686454 ~ 31692913 (+)
LOC103040469 NA coding upstream 40783 31665347 ~ 31682452 (+)
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding upstream 159158 31557646 ~ 31564077 (+)
gbx1 gbx1,LOC107101697 coding upstream 422839 31297379 ~ 31300396 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding upstream 428261 31280534 ~ 31294974 (+)
LOC103041602 LOC108411962,LOC108267169 coding downstream 3026 31736806 ~ 31743161 (+)
ankib1 ankib1,ankib1b,LOC107685566,LOC107596628,LOC107743183,LOC107752829,LOC107673016,LOC107581531 coding downstream 26130 31759910 ~ 31805681 (+)
has2 has2,LOC107685568,LOC107673001,LOC107596747 coding downstream 347371 32081151 ~ 32095575 (+)
LOC103028274 NA coding downstream 444278 32178058 ~ 32198599 (+)
sntb1 sntb1 coding downstream 478289 32212069 ~ 32273229 (+)
G94845 LOC108411960 non-coding upstream 84550 31637954 ~ 31638685 (+)
G94833 NA non-coding upstream 135170 31584967 ~ 31588065 (+)
G94818 NA non-coding upstream 176015 31546753 ~ 31547220 (+)
G94721 agap3 non-coding upstream 407278 31311374 ~ 31315957 (+)
G94707 NA non-coding upstream 418259 31198726 ~ 31304976 (+)
G94865 NA non-coding downstream 74979 31808759 ~ 31812080 (+)
G94904 NA non-coding downstream 117024 31850804 ~ 31851336 (+)
G94907 NA non-coding downstream 145879 31879659 ~ 31879998 (+)
G94915 NA non-coding downstream 191052 31924832 ~ 31945068 (+)
G94918 NA non-coding downstream 305717 32039497 ~ 32039708 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other upstream 2453 31709230 ~ 31720782 (+)
c10h8orf88 cunh8orf88 other upstream 13927 31696953 ~ 31709308 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other upstream 112257 31589947 ~ 31610978 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other upstream 456245 31264866 ~ 31266990 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other upstream 722189 30977186 ~ 31001046 (+)
G94917 NA other downstream 283837 32017617 ~ 32017902 (+)
G94980 NA other downstream 517994 32251774 ~ 32324589 (+)
G95409 NA other downstream 2033742 33767522 ~ 33773312 (+)
LOC103027859 LOC103027859,LOC108437488 other downstream 2495276 34229056 ~ 34254527 (+)
G95577 NA other downstream 2530378 34264158 ~ 34266777 (+)

Expression


Co-expression Network