asb10 (asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532)


Basic Information

Item Value
gene id asb10
gene name asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 31280534 ~ 31294974 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234587.3
GCTCAGGGTGCACATGGCCATTCACTAGACAACAGGCCATCTCAGCACTTCTTTATCCAGTTCTAAAGGATAGAATTAAAGGCCAAGTTCATTTTTCCCTGGTGAAGTGTTGTACTGTGCTGTTCAGCATGTCCAGACGAAGCTTCGCCTTCACTTCCACAGCCCTGCGCTCTCTGGAGCAGGACAGGGACCTGCTCGAGAGACAACACTACCAGAGGAGGCTGGTAGACCCAGTGGTCAGTGGATATCTTCTGAGGAAAGAAGCCAGAGAGAAGACCAGGTTATCCAGACAGACTCTACCAGAGCAGGTCCCTCCAATGGTGTGCCAGGACCTGTTGGTGCAAAATGCCCTGTTCACAGGAAACCTGGAGGCTGTGAAGGAATTCTTCCCTAAAGGCTCTAAAGCCACCCTGGTTATCCAGCCTGAAGGAGGAGCTATGCGCTGGGTCTCCGATGGGAAGGTGAGAGGACTGTGGTCATTGACCTATGAACAGGAGCTGACCACACCGCTGCACATCACGTCAGGCCGGGGCTTCACCGAGTGCCTCAGGCACCTGTTGCTGAGGGGAGCCAATGTTGATTTTGCCCCTGGGGGCACCACCGCCCTGCACGAGGCCTGCGAGGAGTGCCAGCCAGAGTGCGTCAAACTGCTGCTTCAGTACGGTGCCAATGCCAATGCTGTGAATGAGGACGGACTCATGCCCCTGCACGTCTGCACAGAGCTGGACTCTCTGGAATGTGCCAAACACCTCATCCAGTTTGGTGCTGCAATTAACGGCCGCAGCCTGGATGAGAATGACACGCCTCTGCACGTTGCGGCTCGTCACGGCCTCCCCGGACATGTGGGGCTCTACCTGCGGCATGGAGCTCAGCTGGAGCGGCAGAACGACGAGGGCCTTACGCCACTCAATTCAGCCTGCTCACAGCCACAAGACCTGGGTGCCCTGGAGCGCTACACTCAGGTGTGCAAGCAGCTGGTCGAGGCTGGAGCAGACGTGCACACAACTGATGCTGACAAACAAACACCTCTACACATGGCCTGTAAGAATGCCAGTCCAGATGTGGTGGATCTGCTGTTGCAAAATGGTGCCATTGTCAACGACATGGACTATGGTGGGGAGGCACCCATGCATAACATTCTGAAGATGGTGGCCTATAAGTCAGATCACCAGCCGGAGAGGATAGTACAGGCTTTACTGAACTATGGATCTATCAGAGTCTGGCCAGGAGCACTACCTAAGGTGCTGAAGTACTGCTGCATGTCTCCACATACAATAGAAGTGCTGCTAAATGCTTACAGCCGCATCAAGGTTACAGACCAGTGGGTGGAGGCTGTTCCTCCAGAGGTGTTTCAGCAACACAGAGAATTCTATGAGTCGGTGTTTGCATTGGCCTCTACTCCTCGCTCCCTGCAGCACCTGGCCCGTCACCGGCTACGCACCTATCTGGACAGCCGTGTGCACATAGTGGTGCCCAAACTGGGCCTGCCCACCTTTCTGAAGGACTATCTGATGCTGGAGTTCCGAGGCTATATTCACTAGGCACATGCATGATCgtctgtttaacactttatcATAGGTTGAATGGTGAAGACACGTGTACTGACCAGCCCTTTGCCGTGCAATGACTGTTCAGGCTGcagcaaattatttttttacctaacATTTACAATTGTTTAGATTTTTCATGGCATTAtgatatttcaattttttttataatttaatctgattaatgtgATACTATTTAGAACtatggttaaaaatacactgaaCACACAAATGTATCCAGATGAACTATTTAAACAGCCAGTGAAAGATTAttaaatcaatatatattttttattgttcatttgaaaacccatttaaaaatatatattttagccaATCATAAAGTGATGCCATTAGAGTCCTCACTATAACTGATAATAACATTCCAAAAGCAATTGAATCTCCAGCTTTGCCAGACTTACCCACCCCAATATGGTCTATTATTTTTACACCTCTAATCAAAAGTGTTTGATAAAGCATGCCCATATGAAAACCAAATTGCCTGTATTAACTCCTGTTCACACTAACATGGTTAAAAGTGATCTCTTTTCTCTTGTGCACAAGAGTGAGTATAGTCTGAAGATGTATTAGTTTGTATAGATTGTATAGTTTGAATGTTATTAAAATGAGTACAATGTatttaacacaaaaaacacctttttatgAAGACAAGGATTCGCACAAATACagtttgtgtatatttgtgaaAAAGCTAAAGCTTTGACTAGAGAACAATGACTATTGTTTGTGGGAATTGAGTTCAAAGATTCAGTAATGTTCATTCCCTTATGTATTCACTGATTTGTGAAAGCACATGTACAGAAAACATGACTGTGGATTACTTGCTGAATCATGCTGTGTTAATTGTAGTTATAGCATCTCGGATTACTTTACTAATTTTGGATTAAGAAATTTAAgctaatatgttttaaaataataagataataatcaTAATTGATCTTTCTTTTGATGTGTGGGAGGCTTACTGGTCCTGAGCACTCTCTGAAATTTTGATAACTGTCTTCACCACAAGGGGGTGCTGTGGatttcagtgttttaaggtTCTTTGGACCTCTTTTTAGACAAATTGTCTAGAAGGTCAAAAACTGGTTTGTTAAGTTTTACATTTCTAAATAGTTTTGCAGAATTATACACATCAGCTCAtcaatatacagtcatatgtaTTCTTCATCATTATTGTGTAAATTAATTGGCCGCACCCTCAACAAGATgtatgtacttaaaatatatgcACTTTAtctaataaagtatat

Function

symbol description
asb10 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB10 (ankyrin repeat and SOCS box containing 10).

NR:

description
ankyrin repeat and SOCS box protein 10 isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234587.3 True 2821 mRNA 0.44 5 31280534 31294974

Neighbor

gene id symbol gene type direction distance location
LOC111193310 NA coding upstream 405516 30870736 ~ 30875018 (+)
LOC103022402 NA coding upstream 429349 30816617 ~ 30851185 (+)
LOC103023025 fmnl1 coding upstream 719723 30482289 ~ 30560811 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding upstream 1130018 29774260 ~ 30150516 (+)
LOC103030628 NA coding upstream 1693316 29537086 ~ 29587218 (+)
gbx1 gbx1,LOC107101697 coding downstream 2405 31297379 ~ 31300396 (+)
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding downstream 262672 31557646 ~ 31564077 (+)
LOC103040469 NA coding downstream 370373 31665347 ~ 31682452 (+)
LOC103040159 NA coding downstream 391480 31686454 ~ 31692913 (+)
LOC103040991 LOC103040991,LOC108411963,LOC108267159,LOC106597001 coding downstream 428261 31723235 ~ 31733780 (+)
G94699 abcb8,LOC107677282,LOC107599668,LOC107732078 non-coding upstream 312931 30964737 ~ 30967603 (+)
G94682 abcb8,LOC107732078,LOC107677282,LOC107599668 non-coding upstream 317263 30918681 ~ 30963271 (+)
G94689 NA non-coding upstream 333182 30946500 ~ 30947352 (+)
G94688 NA non-coding upstream 336427 30941421 ~ 30944107 (+)
G94687 NA non-coding upstream 347362 30931769 ~ 30933172 (+)
G94721 agap3 non-coding downstream 16400 31311374 ~ 31315957 (+)
G94818 NA non-coding downstream 251779 31546753 ~ 31547220 (+)
G94833 NA non-coding downstream 289993 31584967 ~ 31588065 (+)
G94845 LOC108411960 non-coding downstream 342980 31637954 ~ 31638685 (+)
G94865 NA non-coding downstream 513785 31808759 ~ 31812080 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other upstream 13544 31264866 ~ 31266990 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other upstream 279488 30977186 ~ 31001046 (+)
LOC103021358 NA other upstream 818806 30451578 ~ 30461728 (+)
hamp hamp other upstream 1649500 29626575 ~ 29631034 (+)
G94241 NA other upstream 1897236 29382555 ~ 29383298 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other downstream 294973 31589947 ~ 31610978 (+)
c10h8orf88 cunh8orf88 other downstream 401979 31696953 ~ 31709308 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other downstream 414256 31709230 ~ 31720782 (+)
G94917 NA other downstream 722643 32017617 ~ 32017902 (+)
G94980 NA other downstream 956800 32251774 ~ 32324589 (+)

Expression


Co-expression Network