LOC103030628


Basic Information

Item Value
gene id LOC103030628
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 29537086 ~ 29587218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673372.1
ATGGCACGTGTCCAAGGTGTTGCagGTTCGAGCAGCGTGGAGGGGAAGCGGTGCAGAGATCCTGAAGGAGTACGTTTAGAAGGAGGTGTTCCTGGATCCAGCACTCCACAGCACTTCTTAACTCTGCCCAACTACAACTCCCAGTATCAGCTCCAGTCTGACACCAGCACTCCACAGgTGACGTACAGAGTCCTTCAAGTAAGCGACCAGCCACTGGTTGGTGGAGTGGCAGGAGGCGGGGCAGCGGGCGTGGCCTCTTCTGTTGCATACACTGGAGCCCGGCAGCTGGATATATGCTGTGATTCAGAGCCGTTCAGTGTTGAAGGTGGTCCCGCGGCGGAGGCGATGGGGGGCGAGCCGCGCTTTGCTTATCTCCCCACAGCTGCTGTAAGCGATGTGGCCCCGGTGGGCGTGTCCCTCCAGCCCAGCCAATCAACACTCACCCATTCCGGAGGTCAGTTTTATGTGATGATGACTCCTCCTGATGTTCTGCATGCAGGAGCTCCACGCTCCATAGCTCCACACCCTCATCCCAACACAGCGAAGACGGAGGGTCCGCGGACCCCCAGAGACGATAGGAGGCGGGCGCAACACAACGAAGtggagaggaggaggagagacaaGATCAACAACTGGATCATCACACTGTCCAAAATCATCCCCGACTGCAACCTGGACACCACCAAAACCGGAGCGaGTAAAGGAGGGATCCTGTCGAAGGCCTGCGATTACATCCAGGAGCTGCGGCAGCAGAACCACAGGCTGCAGGAGGGTCTGAACGAGGTGAAGAGAGTCCAGATGGACAGGGAGCTTCTTCAGCAGCAGgtGGAGGAGCTGAAGAGCGAGAATGCATTTCTGCGAGCTCGACTACAGCAGGGAGGAGTCGGGGGTCTTCCAGACGAGCCTTTACTCTGAACTGGAGCTCCATCACATCCTAATGGACCAAAACGTGATGTTCTCCATTCTACAGCCTTCCTACAGTGATCCAAACTCAGTACTGGTTTTTAACACGAGGTAAACTTAAGTTTTCCAGACTGAACTGCCTGAACTGGACCACAAGACTGCTGTTTACACTGGCTGGCAGTGCAAGCCCAATGGAGGCCATGTGTCCTGGAGGAGCCTTCAGACCCGCAAGACcatttttcactgtttattcGCTCGTTTGTTTATTTGcgtgtttatttattcagctCGGACTCCGATAACGAGACGCGCTGTTCCGCGCGGTTCTCATTCATTTGTAGTTCCCACTGGCGCTAATCTACAAGCGTTTGTATCATGTTTCCTTTTTCGCATTTCCATTTTCCCCCCTCCCCGTCACTCGTGCCTTTGTTTTAGTAtcagttgtttattttatgcaCATTTAACGTTTCATGCACAATGCCCCCCTTTCCCTACCTTAAAAAAAGCCCAGCTGGGGCACGACTGAGGAAGTTTGCTGATAACAGAAGAAATAATGgcaaaaaaagtatgaaaatatgaaaaaacattaagaattAATGAGGTCTTGTCAGTATTTAGAACTAAATTCATTGTTAATCACAGCTAAAACGCCCACATGTAGCTGGAAAGTATCTGGAAAGGTGTTGAGATGATAGACAGTAAGATTGTGATGATAAAAAAGGCGCTGCTAAACTAAAGTGAAGTCTTACAATCCTTACAGTGTCTCACTTCCTTTCTATAATGTCTAACGTTACAGCACGTAAAAGATAAACCCATTACATCAGCTATTGTAGCACTAATATACCACAAAATAACCTTTATAGTcagaaataatatattatacagcaaaatccacagttaatcctgcaaaaacacatATCTTTCATCAGCTTTCTCGCCATTACATTTGACAATGTTAAATGCTAAGGGGAGATGTAGAAATGCATTTCTATAGCTTGGCTAATGCCTTTTAAAACTTGGCTATTGTTACTTTTCAAAGTAGCCTAATAAAAAGATTGAAACTAAGTCTTGTAATACAacagtttactgtaaaactactcATCTGAGTAACTAATTCCTCACTAGGTTTACTTACTGTAGTGTATGAAGCTTTTAGTTTCTTCTTCACATTTCCCTTCTACCTTAAAACAcattaccattccaccttaacagttttcctgcattattattatttttttaatctacacTAAAACACAGTTACCTTTTTAGACTGTAGTAAGTAGATGATaaagtgttttaagtgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673372.1 True 2209 mRNA 0.46 11 29537086 29587218

Neighbor

gene id symbol gene type direction distance location
LOC103037974 LOC103037974,LOC108410974 coding upstream 120974 29408513 ~ 29416112 (+)
LOC111193298 LOC108410972 coding upstream 150900 29377574 ~ 29386186 (+)
LOC103023440 NA coding upstream 163198 29353773 ~ 29373888 (+)
LOC111193370 LOC107395558 coding upstream 311065 29222789 ~ 29226021 (+)
LOC103027516 NA coding upstream 333271 29199757 ~ 29203815 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding downstream 187042 29774260 ~ 30150516 (+)
LOC103023025 fmnl1 coding downstream 895071 30482289 ~ 30560811 (+)
LOC103022402 NA coding downstream 1229399 30816617 ~ 30851185 (+)
LOC111193310 NA coding downstream 1283518 30870736 ~ 30875018 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding downstream 1693316 31280534 ~ 31294974 (+)
G94285 etfb,LOC103477870 non-coding upstream 6258 29518512 ~ 29530828 (+)
G94289 NA non-coding upstream 6842 29529240 ~ 29530244 (+)
G94288 NA non-coding upstream 12136 29524367 ~ 29524950 (+)
G94268 lim2,LOC102215845,LOC107379310,LOC100699404 non-coding upstream 75675 29455418 ~ 29461411 (+)
G94262 NA non-coding upstream 114085 29422701 ~ 29423001 (+)
G94421 NA non-coding downstream 88386 29675604 ~ 29676012 (+)
G94427 NA non-coding downstream 165972 29753190 ~ 29790589 (+)
G94434 NA non-coding downstream 204160 29791378 ~ 29842498 (+)
G94446 NA non-coding downstream 305302 29892520 ~ 29894683 (+)
G94468 NA non-coding downstream 595553 30182771 ~ 30195377 (+)
G94241 NA other upstream 153788 29382555 ~ 29383298 (+)
G94233 NA other upstream 171430 29270303 ~ 29365656 (+)
LOC103044382 NA other upstream 190244 29251033 ~ 29346842 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other upstream 211061 29209278 ~ 29326025 (+)
hamp hamp other downstream 39357 29626575 ~ 29631034 (+)
LOC103021358 NA other downstream 864360 30451578 ~ 30461728 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other downstream 1389968 30977186 ~ 31001046 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other downstream 1677648 31264866 ~ 31266990 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other downstream 2002729 31589947 ~ 31610978 (+)

Expression


Co-expression Network