LOC103022402


Basic Information

Item Value
gene id LOC103022402
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 30816617 ~ 30851185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673941.1
AGTCTCACTCTCTGCTGACAGCAGTCGCTGCTTCCTGCACTGGGGTATAGAACAGTGTGAGAAATATGTGGTCACATCATTAAGGGCttggctttaaaaaacattctaaaatgaaaatgaaacagttGTGAGGAGGAAACGACGGCAGAACGCTATAGATTTTCTAATATCAGCTTTTTAAGTCGTGAAACTTACCGGACTGACTGAAGATGTCTAATGAAGGAAACGGACAGAAGAAGACTTATGTGTCCAGCATTAACCTGGAGCTAAAGTCATCAGCTGGACCACACACTGCAACAGACAAGTCGAGGGGGATGCAGAACGGGATGCCCACAGTTTTACCACGGCAGGACAAAGACAACAAGAAAGATCAGGATAAAGGAAAAGATAAAACCCAGACTACAACTGAACCAGATTCAAAACATGTGGATAAACATTCAGTTCCTGAAACCCAGACTGAGCAGCTTCAGAAGAGGACAgataacagagaaaaagaaataagaaCAGCCACTCCTAAGAGAAGAGCGTATGATAGCACAGGCCCCCTGGTGGAGTTCCTGGATCCCGTGGAGAAGGTGCAGGTCCATGTGGGGGAATGCGCTCGACTGCACTGCTCTTTTAAAAGTTTAGGGCCTACAGCTTCCTGTTGGATCCACAACAGAAAAAAGGTTGTGGTGGATGGAGAACATACCAGAATAGAGAGCAgcagtaacagcagcagcttgacCATCTCCGAAGTACTTCCTGCAAATACAGGAAGTTACTCGTTGTTTGTGCGAAATCGACGTGGCACAGCTCAGCACACAATCATTCTCAGCATCAGAGATCGTCCTGATCGTCCGGCCTCGTGTCCATTCGTGTCCCAGTTGACCCCTAGTTCTTTAGTGCTTTCCTGGCGTGGGCCGAGTTACGATGGAGGCTCAGCTGTCACAAACTATGCGGTTGAAATGCAAAACCTTGGCCTGAAGGACTCAGAAGACTGGACAGTGCTCACCACCAAGTGTAAGGACACCACATACCGGGTCACTTCAGGTCTTCACCCACAGGGTGAGTACCGGTTCCGTGTGCGGGCCTGTAACGATATAGGGACCAGCGACCCCAGCGAAGAGTCGGACTGCATCAAGATGAAAACTGCAGGAGATCCACAAGAGGAGATTGTTGAGCCTGTGTCCTATGTGGTGGATGCTGTCACTGACACCACACACACGGTCAAAGATCACTACAACGTTCATGAAAAATTAGGCGTAGGGAAGTTTGGGCAGGTGTTCAGACTGACCCATAAAGACACTGGAAAAGTGTGTGCTGGGAAGTTCTACCGTGCCATCCTGTCCAAAGACAAAGAAGCAGCACGGAAAGAGATCGAGCTGCTAAAGCAGTTACACCACCCTAAACTGGTGCAGTGTCTGGGGGCTTACGACAGCCGCTCCGAGATTGCACTGATTATGGAATATGTTGCTGGTGGTGAGCTGTTCGAGCGCATCGTGGATGAAAACTTTGAGCATACGGAGCCCAACAGCATGCAGTACATGCGGCAGATTCTGGAAGGGGTTCAGTACGTTCATCACAAAAACATCGTCCACCTTGATCTCAAACCAGAGAACATAGTCTGCATCAACTCAACAGGCACTCTTATCAAGATCATTGACTTTGGGCTGGCCAGAAAACTGGAACCAGGAAAGCCTCTTAAGGTGATGCATGGGACACCAGAGTTTGTGGCTCCAGAAGTGATCAATTACGAGGCTGTGGATCTGGCAACCGACATGTGGAGTATTGGGGTAATCTGCTACATCCTactAAGTGGGGAGTCACCGTTTCAGGGCAATAATGATACAGAGACTCTGGCGCTCGTCACTGATGCATCCTGGGAGTTTGTTCCAGAGTTTGATGACATCACAGAAGAAGCGAAAGACTTTATTAAAAAGTTGCTGAAAAAGGAGAAAAGAGCCAGGATGTCCTGTGAGCAGGCTTTGGCTCATGCATGGATGGCATCATCTGCTTCCACTAGACATGTCACAAAAAGTCTGAACAAGGACAAGATAAAGCGTTTCCTGGCCAGGCAGAGATGgcagAAAACGGGTAAAGCTGTGCTGGCACTGAAGAGGATGGCTCATCTCTCACACAGATCAGACGCTTCGGAGTGTCCTACCAGCTCTGTGAACGacacagctctgggaaaagaggcggagttgGCTGTTGCATCTCTGGAGCAGCAGCTGAAGAGTCAGCCCAGTTTCCCCCAGACTCTACATGACCTTACAGAGCCCTGTGGGGCCACTGTATATATGGCCTGCACTATAGAAGGTTACCCTGACCCGGAGGTAGTGTGGCTGCTAGACGATGAGCCAGTGGAAGAAACTGAGCGAGTTCAGATACAGTACAAGGAGGACGGCCTGTGCACCCTCACACTGGCTCACATCCAGCCCGAGGACTCTGGAATATACGAGTGTCGTGCTTCCAACTACCTGGGGCAGGCTCTGTGTTCCGCCAGACTCAGTGTGGCCAGGTAGATTAGACTGGAGGACAGATGTTTCTGAAGCAGTGGtgtatcaattaaaataaagtatgatGCTCCCTCTTTTTACACAGAACTTTGTAGACAGATTTTTCATATCATACTGATTTAAACTAAATCAGTCTCTAAACTAAAGTGAACATTTCAGATTTTGTGTTTATGTAAGATTATTACTAtgtacaattttaaa
>XM_022673942.1
AGTCTCACTCTCTGCTGACAGCAGTCGCTGCTTCCTGCACTGGGGTATAGAACAGTGTGAGAAATATGTGGTCACATCATTAAGGGCttggctttaaaaaacattctaaaatgaaaatgaaacagttGTGAGGAGGAAACGACGGCAGAACGCTATAGATTTTCTAATATCAGCTTTTTAAGTCGTGAAACTTACCGGACTGACTGAAGATGTCTAATGAAGGAAACGGACAGAAGAAGACTTATGTGTCCAGCATTAACCTGGAGCTAAAGTCATCAGCTGGACCACACACTGCAACAGACAAGTCGAGGGGGATGCAGAACGGGATGCCCACAGTTTTACCACGGCAGGACAAAGACAACAAGAAAGATCAGGATAAAGGAAAAGATAAAACCCAGACTACAACTGAACCAGATTCAAAACATGTGGATAAACATTCAGTTCCTGAAACCCAGACTGAGCAGCTTCAGAAGAGGACAgataacagagaaaaagaaataagaaCCACTCCTAAGAGAAGAGCGTATGATAGCACAGGCCCCCTGGTGGAGTTCCTGGATCCCGTGGAGAAGGTGCAGGTCCATGTGGGGGAATGCGCTCGACTGCACTGCTCTTTTAAAAGTTTAGGGCCTACAGCTTCCTGTTGGATCCACAACAGAAAAAAGGTTGTGGTGGATGGAGAACATACCAGAATAGAGAGCAgcagtaacagcagcagcttgacCATCTCCGAAGTACTTCCTGCAAATACAGGAAGTTACTCGTTGTTTGTGCGAAATCGACGTGGCACAGCTCAGCACACAATCATTCTCAGCATCAGAGATCGTCCTGATCGTCCGGCCTCGTGTCCATTCGTGTCCCAGTTGACCCCTAGTTCTTTAGTGCTTTCCTGGCGTGGGCCGAGTTACGATGGAGGCTCAGCTGTCACAAACTATGCGGTTGAAATGCAAAACCTTGGCCTGAAGGACTCAGAAGACTGGACAGTGCTCACCACCAAGTGTAAGGACACCACATACCGGGTCACTTCAGGTCTTCACCCACAGGGTGAGTACCGGTTCCGTGTGCGGGCCTGTAACGATATAGGGACCAGCGACCCCAGCGAAGAGTCGGACTGCATCAAGATGAAAACTGCAGGAGATCCACAAGAGGAGATTGTTGAGCCTGTGTCCTATGTGGTGGATGCTGTCACTGACACCACACACACGGTCAAAGATCACTACAACGTTCATGAAAAATTAGGCGTAGGGAAGTTTGGGCAGGTGTTCAGACTGACCCATAAAGACACTGGAAAAGTGTGTGCTGGGAAGTTCTACCGTGCCATCCTGTCCAAAGACAAAGAAGCAGCACGGAAAGAGATCGAGCTGCTAAAGCAGTTACACCACCCTAAACTGGTGCAGTGTCTGGGGGCTTACGACAGCCGCTCCGAGATTGCACTGATTATGGAATATGTTGCTGGTGGTGAGCTGTTCGAGCGCATCGTGGATGAAAACTTTGAGCATACGGAGCCCAACAGCATGCAGTACATGCGGCAGATTCTGGAAGGGGTTCAGTACGTTCATCACAAAAACATCGTCCACCTTGATCTCAAACCAGAGAACATAGTCTGCATCAACTCAACAGGCACTCTTATCAAGATCATTGACTTTGGGCTGGCCAGAAAACTGGAACCAGGAAAGCCTCTTAAGGTGATGCATGGGACACCAGAGTTTGTGGCTCCAGAAGTGATCAATTACGAGGCTGTGGATCTGGCAACCGACATGTGGAGTATTGGGGTAATCTGCTACATCCTactAAGTGGGGAGTCACCGTTTCAGGGCAATAATGATACAGAGACTCTGGCGCTCGTCACTGATGCATCCTGGGAGTTTGTTCCAGAGTTTGATGACATCACAGAAGAAGCGAAAGACTTTATTAAAAAGTTGCTGAAAAAGGAGAAAAGAGCCAGGATGTCCTGTGAGCAGGCTTTGGCTCATGCATGGATGGCATCATCTGCTTCCACTAGACATGTCACAAAAAGTCTGAACAAGGACAAGATAAAGCGTTTCCTGGCCAGGCAGAGATGgcagAAAACGGGTAAAGCTGTGCTGGCACTGAAGAGGATGGCTCATCTCTCACACAGATCAGACGCTTCGGAGTGTCCTACCAGCTCTGTGAACGacacagctctgggaaaagaggcggagttgGCTGTTGCATCTCTGGAGCAGCAGCTGAAGAGTCAGCCCAGTTTCCCCCAGACTCTACATGACCTTACAGAGCCCTGTGGGGCCACTGTATATATGGCCTGCACTATAGAAGGTTACCCTGACCCGGAGGTAGTGTGGCTGCTAGACGATGAGCCAGTGGAAGAAACTGAGCGAGTTCAGATACAGTACAAGGAGGACGGCCTGTGCACCCTCACACTGGCTCACATCCAGCCCGAGGACTCTGGAATATACGAGTGTCGTGCTTCCAACTACCTGGGGCAGGCTCTGTGTTCCGCCAGACTCAGTGTGGCCAGGTAGATTAGACTGGAGGACAGATGTTTCTGAAGCAGTGGtgtatcaattaaaataaagtatgatGCTCCCTCTTTTTACACAGAACTTTGTAGACAGATTTTTCATATCATACTGATTTAAACTAAATCAGTCTCTAAACTAAAGTGAACATTTCAGATTTTGTGTTTATGTAAGATTATTACTAtgtacaattttaaa
>XM_022673943.1
AGTCTCACTCTCTGCTGACAGCAGTCGCTGCTTCCTGCACTGGGGTATAGAACAGTGTGAGAAATATGTGGTCACATCATTAAGGGCttggctttaaaaaacattctaaaatgaaaatgaaacagttGTGAGGAGGAAACGACGGCAGAACGCTATAGATTTTCTAATATCAGCTTTTTAAGTCGTGAAACTTACCGGACTGACTGAAGATGTCTAATGAAGGAAACGGACAGAAGAAGACTTATGTGTCCAGCATTAACCTGGAGCTAAAGTCATCAGCTGGACCACACACTGCAACAGACAAGTCGAGGGGGATGCAGAACGGGATGCCCACAGTTTTACCACGGCAGGACAAAGACAACAAGAAAGATCAGGATAAAGGAAAAGCAGCCACTCCTAAGAGAAGAGCGTATGATAGCACAGGCCCCCTGGTGGAGTTCCTGGATCCCGTGGAGAAGGTGCAGGTCCATGTGGGGGAATGCGCTCGACTGCACTGCTCTTTTAAAAGTTTAGGGCCTACAGCTTCCTGTTGGATCCACAACAGAAAAAAGGTTGTGGTGGATGGAGAACATACCAGAATAGAGAGCAgcagtaacagcagcagcttgacCATCTCCGAAGTACTTCCTGCAAATACAGGAAGTTACTCGTTGTTTGTGCGAAATCGACGTGGCACAGCTCAGCACACAATCATTCTCAGCATCAGAGATCGTCCTGATCGTCCGGCCTCGTGTCCATTCGTGTCCCAGTTGACCCCTAGTTCTTTAGTGCTTTCCTGGCGTGGGCCGAGTTACGATGGAGGCTCAGCTGTCACAAACTATGCGGTTGAAATGCAAAACCTTGGCCTGAAGGACTCAGAAGACTGGACAGTGCTCACCACCAAGTGTAAGGACACCACATACCGGGTCACTTCAGGTCTTCACCCACAGGGTGAGTACCGGTTCCGTGTGCGGGCCTGTAACGATATAGGGACCAGCGACCCCAGCGAAGAGTCGGACTGCATCAAGATGAAAACTGCAGGAGATCCACAAGAGGAGATTGTTGAGCCTGTGTCCTATGTGGTGGATGCTGTCACTGACACCACACACACGGTCAAAGATCACTACAACGTTCATGAAAAATTAGGCGTAGGGAAGTTTGGGCAGGTGTTCAGACTGACCCATAAAGACACTGGAAAAGTGTGTGCTGGGAAGTTCTACCGTGCCATCCTGTCCAAAGACAAAGAAGCAGCACGGAAAGAGATCGAGCTGCTAAAGCAGTTACACCACCCTAAACTGGTGCAGTGTCTGGGGGCTTACGACAGCCGCTCCGAGATTGCACTGATTATGGAATATGTTGCTGGTGGTGAGCTGTTCGAGCGCATCGTGGATGAAAACTTTGAGCATACGGAGCCCAACAGCATGCAGTACATGCGGCAGATTCTGGAAGGGGTTCAGTACGTTCATCACAAAAACATCGTCCACCTTGATCTCAAACCAGAGAACATAGTCTGCATCAACTCAACAGGCACTCTTATCAAGATCATTGACTTTGGGCTGGCCAGAAAACTGGAACCAGGAAAGCCTCTTAAGGTGATGCATGGGACACCAGAGTTTGTGGCTCCAGAAGTGATCAATTACGAGGCTGTGGATCTGGCAACCGACATGTGGAGTATTGGGGTAATCTGCTACATCCTactAAGTGGGGAGTCACCGTTTCAGGGCAATAATGATACAGAGACTCTGGCGCTCGTCACTGATGCATCCTGGGAGTTTGTTCCAGAGTTTGATGACATCACAGAAGAAGCGAAAGACTTTATTAAAAAGTTGCTGAAAAAGGAGAAAAGAGCCAGGATGTCCTGTGAGCAGGCTTTGGCTCATGCATGGATGGCATCATCTGCTTCCACTAGACATGTCACAAAAAGTCTGAACAAGGACAAGATAAAGCGTTTCCTGGCCAGGCAGAGATGgcagAAAACGGGTAAAGCTGTGCTGGCACTGAAGAGGATGGCTCATCTCTCACACAGATCAGACGCTTCGGAGTGTCCTACCAGCTCTGTGAACGacacagctctgggaaaagaggcggagttgGCTGTTGCATCTCTGGAGCAGCAGCTGAAGAGTCAGCCCAGTTTCCCCCAGACTCTACATGACCTTACAGAGCCCTGTGGGGCCACTGTATATATGGCCTGCACTATAGAAGGTTACCCTGACCCGGAGGTAGTGTGGCTGCTAGACGATGAGCCAGTGGAAGAAACTGAGCGAGTTCAGATACAGTACAAGGAGGACGGCCTGTGCACCCTCACACTGGCTCACATCCAGCCCGAGGACTCTGGAATATACGAGTGTCGTGCTTCCAACTACCTGGGGCAGGCTCTGTGTTCCGCCAGACTCAGTGTGGCCAGGTAGATTAGACTGGAGGACAGATGTTTCTGAAGCAGTGGtgtatcaattaaaataaagtatgatGCTCCCTCTTTTTACACAGAACTTTGTAGACAGATTTTTCATATCATACTGATTTAAACTAAATCAGTCTCTAAACTAAAGTGAACATTTCAGATTTTGTGTTTATGTAAGATTATTACTAtgtacaattttaaa

Function

GO: NA

KEGG:

id description
K08884 K08884; serine/threonine protein kinase, bacterial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673941.1 True 2702 mRNA 0.48 15 30816617 30851185
XM_022673942.1 False 2699 mRNA 0.48 15 30816617 30851185
XM_022673943.1 False 2585 mRNA 0.48 14 30816617 30851185

Neighbor

gene id symbol gene type direction distance location
LOC103023025 fmnl1 coding upstream 255806 30482289 ~ 30560811 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding upstream 666101 29774260 ~ 30150516 (+)
LOC103030628 NA coding upstream 1229399 29537086 ~ 29587218 (+)
LOC103037974 LOC103037974,LOC108410974 coding upstream 1400505 29408513 ~ 29416112 (+)
LOC111193298 LOC108410972 coding upstream 1430431 29377574 ~ 29386186 (+)
LOC111193310 NA coding downstream 19551 30870736 ~ 30875018 (+)
asb10 asb10,LOC107677219,LOC107717248,LOC107732081,LOC107555532 coding downstream 429349 31280534 ~ 31294974 (+)
gbx1 gbx1,LOC107101697 coding downstream 446194 31297379 ~ 31300396 (+)
LOC111193377 nbeal2,LOC107685597,LOC107743212,LOC107596634,LOC107752840,LOC107581539 coding downstream 706461 31557646 ~ 31564077 (+)
LOC103040469 NA coding downstream 814162 31665347 ~ 31682452 (+)
G94650 NA non-coding upstream 6388 30809954 ~ 30810229 (+)
G94598 grn non-coding upstream 25638 30787187 ~ 30790979 (+)
G94589 arf2b,LOC108263862,LOC108429183,LOC107677191,LOC107554546,LOC105892790 non-coding upstream 66369 30745768 ~ 30750248 (+)
G94586 NA non-coding upstream 91767 30723080 ~ 30724850 (+)
G94555 NA non-coding upstream 305089 30420002 ~ 30511528 (+)
G94660 NA non-coding downstream 2653 30853838 ~ 30857500 (+)
G94681 NA non-coding downstream 64269 30915454 ~ 30915682 (+)
G94682 abcb8,LOC107732078,LOC107677282,LOC107599668 non-coding downstream 67496 30918681 ~ 30963271 (+)
G94687 NA non-coding downstream 80584 30931769 ~ 30933172 (+)
G94688 NA non-coding downstream 90236 30941421 ~ 30944107 (+)
LOC103021358 NA other upstream 354889 30451578 ~ 30461728 (+)
hamp hamp other upstream 1185583 29626575 ~ 29631034 (+)
G94241 NA other upstream 1433319 29382555 ~ 29383298 (+)
G94233 NA other upstream 1450961 29270303 ~ 29365656 (+)
LOC111193374 NA other upstream 1560053 29256178 ~ 29256564 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other downstream 126001 30977186 ~ 31001046 (+)
LOC103022800 zgc:92591,LOC103022800,LOC108429172,LOC108260489,LOC107690974,LOC107554735,LOC105895240,LOC105019623 other downstream 413681 31264866 ~ 31266990 (+)
LOC103045891 nradd,LOC108411964,LOC107581538 other downstream 738762 31589947 ~ 31610978 (+)
c10h8orf88 cunh8orf88 other downstream 845768 31696953 ~ 31709308 (+)
LOC103041301 LOC108411965,LOC107752846,LOC107672999,LOC107685619,LOC107743234 other downstream 858045 31709230 ~ 31720782 (+)

Expression


Co-expression Network