LOC111193374


Basic Information

Item Value
gene id LOC111193374
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 29256178 ~ 29256564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU126792
CAGGAGATCAAAGGAAAACAGAGGGAAGAGAGCAAAtggtaaaaaacacaaaaagtgtgcaaatttATAACAGGTAAGTATAACAGGTAAGCATCTAAGGTAAGTATAACAGGTAAGTATAACAGGTAAGCATCTATGGTAAGTATAACAGGTAAGCATCTAAGGTAAGTATAACAGGTAAGTATAACAGGTAAGCATCTATGGTAAGTATAACAG
>XR_002650484.1
GGAGATCAAAGGAAAACAGAGGGAAGAGAGCAAAtggtaaaaaacacaaaaagtgtgcaaatttATAACAGGTAAGTATAACAGGTAAGCATCTAAGGTAAGTATAACAGGTAAGTATAACAGGTAAGCATCTATGGTAAGTATAACAGGTAAGCATCTAAGGTAAGTATAACAACAGTTTAATATAACCAGTAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126792 True 216 lncRNA 0.34 2 29256178 29256459
XR_002650484.1 False 197 ncRNA 0.33 3 29256180 29256564

Neighbor

gene id symbol gene type direction distance location
LOC111193370 LOC107395558 coding upstream 30157 29222789 ~ 29226021 (+)
LOC103027516 NA coding upstream 52363 29199757 ~ 29203815 (+)
LOC103022075 LOC108432749 coding upstream 64482 28873542 ~ 29191696 (+)
LOC103025501 lrrc30,lrrc30a,LOC103025501,LOC108432734,LOC107579084,LOC107566920 coding upstream 406765 28846499 ~ 28849413 (+)
LOC103026119 arhgap28,LOC108432752 coding upstream 501939 28697092 ~ 28754239 (+)
LOC103023440 NA coding downstream 97209 29353773 ~ 29373888 (+)
LOC111193298 LOC108410972 coding downstream 121010 29377574 ~ 29386186 (+)
LOC103037974 LOC103037974,LOC108410974 coding downstream 151949 29408513 ~ 29416112 (+)
LOC103030628 NA coding downstream 280522 29537086 ~ 29587218 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding downstream 517696 29774260 ~ 30150516 (+)
LOC111193371 NA non-coding upstream 173914 29072604 ~ 29082264 (+)
G94148 NA non-coding upstream 593093 28660365 ~ 28663085 (+)
G94147 NA non-coding upstream 593862 28656373 ~ 28662316 (+)
G94145 NA non-coding upstream 600224 28655407 ~ 28655954 (+)
G94132 NA non-coding upstream 626347 28624200 ~ 28629831 (+)
G94238 NA non-coding downstream 4873 29261437 ~ 29301835 (+)
G94243 NA non-coding downstream 56655 29313219 ~ 29348408 (+)
G94234 NA non-coding downstream 90789 29347353 ~ 29347908 (+)
G94256 NA non-coding downstream 134348 29390912 ~ 29391168 (+)
G94262 NA non-coding downstream 166137 29422701 ~ 29423001 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other upstream 1316245 27919092 ~ 27939933 (+)
G93753 NA other upstream 2307299 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 2863743 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 3942471 25311877 ~ 25313707 (+)
G93135 NA other upstream 4290734 24914689 ~ 24965444 (+)
G94233 NA other downstream 13739 29270303 ~ 29365656 (+)
G94241 NA other downstream 125991 29382555 ~ 29383298 (+)
hamp hamp other downstream 370011 29626575 ~ 29631034 (+)
LOC103021358 NA other downstream 1195014 30451578 ~ 30461728 (+)
LOC103032422 atg9b,LOC107717223,LOC102789368,LOC105893796,LOC107599667 other downstream 1720622 30977186 ~ 31001046 (+)

Expression


Co-expression Network