LOC111193371


Basic Information

Item Value
gene id LOC111193371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 29072604 ~ 29082264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650480.1
CCTTTACCATTGGAGACAACAAGACCTATGAGGGCTACTGGAATGCCCCCTGCTGCCCCACAAGAGCTACAGCATCTACTATCAAGCAGTCAGCAAGGCCAATGGGgaAACCAAAATCGATTGTGTTCGTGTGGCCACTAAAGCCGCCATAATCGTGACCCAGCTCACCACGCCATACATACGCATCGCGCCGGCCGCAGGCGACAACCAGCTAACAGGTCAGAGCCCTCACTGCCCCGCCTCTTTAACACTCtacatgtatgtttgtgtgtgtgtgtgtatttgaaacCCTGCCTCTTTATGAAGCCATGTAATGTTTctatgattgtgagtgtgtgtttgtgtgtatgtgtgtgcatgtattaTAAACTGGCAGTCTAGAAGAAATGCTCCGATTGCTTTTTTCACACCACAAAgtctaattaaaaatgtaaaaatctatgTATTCCAATAAGTCTTCACTGACCTTCATAACTTCCTTGCACCACTTCATCATATTTATGTTTTCATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650480.1 True 513 lncRNA 0.45 3 29072604 29082264

Neighbor

gene id symbol gene type direction distance location
LOC103025501 lrrc30,lrrc30a,LOC103025501,LOC108432734,LOC107579084,LOC107566920 coding upstream 223191 28846499 ~ 28849413 (+)
LOC103026119 arhgap28,LOC108432752 coding upstream 318365 28697092 ~ 28754239 (+)
LOC103045083 NA coding upstream 726579 28318773 ~ 28346025 (+)
LOC103037440 NA coding upstream 763954 28304534 ~ 28308650 (+)
LOC103037774 NA coding upstream 771463 28298328 ~ 28301141 (+)
LOC103027516 NA coding downstream 117493 29199757 ~ 29203815 (+)
LOC111193370 LOC107395558 coding downstream 140525 29222789 ~ 29226021 (+)
LOC103023440 NA coding downstream 271509 29353773 ~ 29373888 (+)
LOC111193298 LOC108410972 coding downstream 295310 29377574 ~ 29386186 (+)
LOC103037974 LOC103037974,LOC108410974 coding downstream 326249 29408513 ~ 29416112 (+)
G94148 NA non-coding upstream 409519 28660365 ~ 28663085 (+)
G94147 NA non-coding upstream 410288 28656373 ~ 28662316 (+)
G94145 NA non-coding upstream 416650 28655407 ~ 28655954 (+)
G94132 NA non-coding upstream 442773 28624200 ~ 28629831 (+)
LOC111193367 NA non-coding upstream 635130 28433999 ~ 28437474 (+)
G94238 NA non-coding downstream 179173 29261437 ~ 29301835 (+)
G94243 NA non-coding downstream 230955 29313219 ~ 29348408 (+)
G94234 NA non-coding downstream 265089 29347353 ~ 29347908 (+)
G94256 NA non-coding downstream 308648 29390912 ~ 29391168 (+)
G94262 NA non-coding downstream 340437 29422701 ~ 29423001 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other upstream 1132671 27919092 ~ 27939933 (+)
G93753 NA other upstream 2123725 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 2680169 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 3758897 25311877 ~ 25313707 (+)
G93135 NA other upstream 4107160 24914689 ~ 24965444 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 127014 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 168769 29251033 ~ 29346842 (+)
LOC111193374 NA other downstream 173914 29256178 ~ 29256564 (+)
G94233 NA other downstream 188039 29270303 ~ 29365656 (+)
G94241 NA other downstream 300291 29382555 ~ 29383298 (+)

Expression


Co-expression Network