LOC111193309 (l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345)


Basic Information

Item Value
gene id LOC111193309
gene name l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 27919092 ~ 27939933 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU126349
tgtggctgtgtgtgtgtgtgtgtgtttgtttgtgtgtgtgtagagaggaACGTGGACAGTCTTCAGCAGGCCCTGCATCAGTCAGTCTTCCTGTCGGCCATGTCTGCTCATCCGGGCCGTGACCTGCCGCTGTGCTGGGAGCAGCACTGTAAACTCCTGCCGGGTGTGGCTGGTGTGCAGGCCAGTCGTGTAGCTGACTGGACAGTGGAGGAGGTGGCTGACTTCATCCATTCTCTCCCAGGCTGTGAAGAACAAGCCAAGCAGTTCAGAGAGGAGCAAATCGACGGCAAGGCATTCCTTCTTCTGACGCAGCGAGACATCGTGAAGATCATGAGTGTTAAGCTCGGCCCCGCCCTCAAAATCTACAATTCCATCCTGATGTTCAAGCACGCTGAGGACAGCCAATCAGCAAGCAGCGATACTAATACATGAAGTCTATGAATATGACCCCCCCCTTGAGTTGTATGTGAACACAGATGTCTACTGTATTGATGCATTCCAgcctcctcctctctccaccCCTTCCAGCCACTCAGACATAAAGGTACCCGGTAAAAGgacctccccctctctctctctctctctctctctctctctctctctcttcaaagAGGAAGTGTTCACACCTCTGCCTTTCAGGATCCAGTTTCTGTCACAACCTTCAAATCTGCCTTGAAATGTAAAAAGCAAAGGTAAGCTTAACCCATAAGCCAGCAGCAGCTCTCTATTCTCCCACAGGCTGAACCCTCTTCCTCCAtgtccctctcctcctcctcctcctcttcttaaTCATGTAATCTCCTCCTccctgcagaaaaaaagaaaactcaatgAAATGACAATCAATCAACCACAAAAGGTAACAAACAGCACAGCCAGCTTTCATAACGAGGGTTGTAACAGTAAAGGTGCTTTTTATATCAAACACAACAGTCTGAACAGCATTTGATAAGCAGGTCTCAGTCTCTGCTGCAGCATATGATTACATCGGCTGACTTTTATCCTGGGAGAGGCCCTTTGTGCTAACTGCT
>TU126350
tgtggctgtgtgtgtgtgtgtgtgtttgtttgtgtgtgtgtagagaggaACGTGGACAGTCTTCAGCAGGCCCTGCATCAGTCAGTCTTCCTGTCGGCCATGTCTGCTCATCCGGGCCGTGACCTGCCGCTGTGCTGGGAGCAGCACTGTAAACTCCTGCCGGGTGTGGCTGGTGTGCAGGCCAGTCGTGTAGCTGACTGGACAGTGGAGGAGGTGGCTGACTTCATCCATTCTCTCCCAGGCTGTGAAGAACAAGCCAAGCAGTTCAGAGAGGAGCAAATCGACGGCAAGGCATTCCTTCTTCTGACGCAGCGAGACATCGTGAAGATCATGAGTGTTAAGCTCGGCCCCGCCCTCAAAATCTACAATTCCATCCTGATGTTCAAGCACGCTGAGGACAGCCAATCAGCAAGCAGCGATACTAATACATGAAGTCTATGAATATGACCCCCCCCTTGAGTTGTATGTGAACACAGATGTCTACTGTATTGATGCATTCCAgcctcctcctctctccaccCCTTCCAGCCACTCAGACATAAAGGTACCCGGTAAAAGgacctccccctctctctctctctctctctctctctctctctctctcttcaaagAGGAAGTGTTCACACCTCTGCCTTTCAGGATCCAGTTTCTGTCACAACCTTCAAATCTGCCTTGAAATGTAAAAAGCAAAGGTAAGCTTAACCCATAAGCCAGCAGCAGCTCTCTATTCTCCCACAGGCTGAACCCTCTTCCTCCAtgtccctctcctcctcctcctcctcttcttaaTCATGTAATCTCCTCCTccctgcagaaaaaaagaaaactcaatgAAATGACAATCAATCAACCACAAAAGGTAACAAACAGCACAGCCAGCTTTCATAACGAGGGTTGTAACAGTAAAGGTGCTTTTTATATCAAACACAACAGTCTGAACAGCATTTGATAAGCAGGTCTCAGTCTCTGCTGCAGCATATGATTACATCGGCTGACTTTTATCCTGGGAGAGGCCCTTTGTGCTAACTGCT
>TU126352
AGGTGGCTGACTTCATCCATTCTCTCCCAGGCTGTGAAGAACAAGCCAAGCAGTTCAGAGAGGAGCAAATCGACGGCAAGGCATTCCTTCTTCTGACGCAGCGAGACATCGTGAAGATCATGAGTGTTAAGCTCGGCCCCGCCCTCAAAATCTACAATTCCATCCTGATGTTCAAGCACGCTGAGGACAGCCAATCAGCAAGCAGCGATACTAATACATGAAGTCTATGAATATGACCCCCCCCTTGAGTTGTATGTGAACACAGATGTCTACTGTATTGATGCATTCCAgcctcctcctctctccaccCCTTCCAGCCACTCAGACATAAAGGTACCCGGTAAAAGgacctccccctctctctctctctctctctctctctctctctctctcttcaaagAGGAAGTGTTCACACCTCTGCCTTTCAGGATCCAGTTTCTGTCACAACCTTCAAATCTGCCTTGAAATGTAAAAAGCAAAGGTAAGCTTAACCCATAAGCCAGCAGCAGCTCTCTATTCTCCCACAGGCTGAACCCTCTTCCTCCAtgtccctctcctcctcctcctcctcttcttaaTCATGTAATCTCCTCCTccctgcagaaaaaaagaaaactcaatgAAATGACAATCAATCAACCACAAAAGGTAACAAACAGCACAGCCAGCTTTCATAACGAGGGTTGTAACAGTAAAGGTGCTTTTTATATCAAACACAACAGTCTGAACAGCATTTGATAAGCAGGTCTCAGTCTCTGCTGCAGCATATGATTACATCGGCTGACTTTTATCCTGGGAGAGGCCCTTTGTGCTAACTGCT
>XM_022673368.1
ATGCTTGAGCGCAGACCAAGCTGTCTTCACATTGCTAGAGGCGAGGTTTGCTACTCCTTCGACACGCAGACAACACCAGCAGTGAGGCCTCAGATGTGCTCAGATGGGTTTTCACGTCTGACGTCTCTGACAGagaggaACGTGGACAGTCTTCAGCAGGCCCTGCATCAGTCAGTCTTCCTGTCGGCCATGTCTGCTCATCCGGGCCGTGACCTGCCGCTGTGCTGGGAGCAGCACTGTAAACTCCTGCCGGGTGTGGCTGGTGTGCAGGCCAGTCGTGTAGCTGACTGGACAGTGGAGGAGGTGGCTGACTTCATCCATTCTCTCCCAGGCTGTGAAGAACAAGCCAAGCAGTTCAGAGAGGAGCAAATCGACGGCAAGGCATTCCTTCTTCTGACGCAGCGAGACATCGTGAAGATCATGAGTGTTAAGCTCGGCCCCGCCCTCAAAATCTACAATTCCATCCTGATGTTCAAGCACGCTGAGGACAGCCAATCAGCAAGCAGCGATACTAATACATGAAGTCTATGAATATGACCCCCCCCTTGAGTTGTATGTGAACACAGATGTCTACTGTATTGATGCATTCCAgcctcctcctctctccaccCCTTCCAGCCACTCAGACATAAAGGTACCCGGTAAAAGgacctccccctctctctctctctctctctctctctctctctctctcttcaaagAGGAAGTGTTCACACCTCTGCCTTTCAGGATCCAGTTTCTGTCACAACCTTCAAATCTGCCTTGAAATGTAAAAAGCAAAGGTAAGCTTAACCCATAAGCCAGCAGCAGCTCTCTATTCTCCCACAGGCTGAACCCTCTTCCTCCAtgtccctctcctcctcctcctcctcttcttaaTCATGTAATCTCCTCCTccctgcagaaaaaaagaaaactcaatgAAATGACAATCAATCAACCACAAAAGGTAACAAACAGCACAGCCAGCTTTCATAACGAGGGTTGTAACAGTAAAGGTGCTTTTTATATCAAACACAACAGTCTGAACAGCATTTGATAAGCAGGTCTCAGTCTCTGCTGCAGCATATGATTACATCGGCTGACTTTTATCCTGGGAGAGGCCCTTTGTGCTAACTGCTCCTTATTTTAGTATCTATTTTGTAtagatgatatatatataaatataaatatataattttctctGTACCTGCTGATTCATCACCTTTATTTATTGTGAAAATCTAGGTCTGTCTGTaaggaaaaataatatattatatattcagaaTTTTCAAATGccaaaaggattttttttttttaaataatgtttatttttgtgatgTATTGCACATTTAGCTCAAGGTCAAATATCCAAAATCTTTGGATGGATTCAAATGAATTTAAATTGCTATTTGAGTTGTAATTTAAAGTAGCTAGAATACTTTGAgtgtcatttttttgtgttaagtgAGTTCTAATTCTTGAAAGTAGGTTTATTAAATAGGCTTTTCAGCAGTAATTCAGGATCTGTAAAGTCTTTCTTGTACTTTTTCTGGAAAGATTTCTTTTCACACTGTCGACCCTCAGGGGGAATTTTTGGTAACTGTTTAAAGGTTTCTTCTAATGCACACCCATGACGATgtgtgtacatatttatatttgctATATGTTTTTGAATTATTCTAACTGAAGCTGTCCATTCAAATGTGTTTGTACCAATGACGTGAATGAAACTTCAGCAGTGTAACTCTGTTTCTCGTCTTTTCCTGctttcatgttttctttcttttgcctTGGGTCGTCTCAGTCCCAAAATAAAGAGCACCAGGTATTCTGATCCTTTACGATACGTTCTCAGACTGCTGTTAAACGCATGGTGCAGTGCTACAATAAGCTGGTTCTAGTCTCCTGATTCCAAATGCCATCTGATTTAACCTtgaaatgtactgtaaatatttgtTAATCTGATTTCTTACACTGAATTTACACTTTGTACAACAGAACACATTCGCAAGCTCATGAcccaaataataaacaattcaAATTCCCTATTGA

Function

symbol description
l3mbtl4 Orthologous to human L3MBTL4 (L3MBTL histone methyl-lysine binding protein 4).

NR:

description
PREDICTED: lethal(3)malignant brain tumor-like protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126349 False 1031 TUCP 0.49 3 27919594 27939020
TU126350 False 1031 TUCP 0.49 3 27919594 27939020
TU126352 False 820 lncRNA 0.47 2 27933838 27939020
XM_022673368.1 True 2034 mRNA 0.42 4 27919092 27939933

Neighbor

gene id symbol gene type direction distance location
capn7 capn7,LOC107705521,LOC107755679 coding upstream 670308 27225087 ~ 27248784 (+)
nub1 NA coding upstream 702205 27207410 ~ 27216887 (+)
LOC103039637 NA coding upstream 713754 27197914 ~ 27205338 (+)
LOC103037861 scn12ab,LOC108436082,LOC100305061,LOC105894747 coding upstream 1105337 26612471 ~ 26813755 (+)
LOC103033764 kcnh2,kcnh2b coding upstream 1672926 25871826 ~ 26246166 (+)
tmem200c tmem200c coding downstream 17945 27957878 ~ 27983782 (+)
LOC103040375 LOC108432756 coding downstream 65265 28005198 ~ 28156592 (+)
zbtb14 zbtb14,LOC107698704 coding downstream 219800 28159733 ~ 28163252 (+)
LOC103043264 LOC107698705,LOC107728997,LOC108276921,LOC108432759 coding downstream 223883 28163816 ~ 28182133 (+)
LOC103040072 LOC108432760 coding downstream 272891 28212824 ~ 28226157 (+)
G93882 NA non-coding upstream 409556 27508985 ~ 27509536 (+)
G93864 NA non-coding upstream 441902 27476918 ~ 27477190 (+)
G93856 NA non-coding upstream 482120 27436756 ~ 27436972 (+)
G93797 sh3bp5,sh3bp5b,LOC107588490,LOC107755668,LOC107704986,LOC107705532 non-coding upstream 624522 27267904 ~ 27294570 (+)
G93789 NA non-coding upstream 699123 27218225 ~ 27219969 (+)
G93959 NA non-coding downstream 205893 28145826 ~ 28147493 (+)
G93961 NA non-coding downstream 218846 28158779 ~ 28159038 (+)
G93973 NA non-coding downstream 331214 28271147 ~ 28273486 (+)
G93979 ssr1 non-coding downstream 345623 28285556 ~ 28317908 (+)
G93981 NA non-coding downstream 347243 28287176 ~ 28288253 (+)
G93753 NA other upstream 970213 26948463 ~ 26948879 (+)
LOC103034726 LOC108436089 other upstream 1526657 26267493 ~ 26392435 (+)
G93185 LOC105900568,LOC101883708 other upstream 2605385 25311877 ~ 25313707 (+)
G93135 NA other upstream 2953648 24914689 ~ 24965444 (+)
G93079 NA other upstream 3210718 24698133 ~ 24708374 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 1269345 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 1311100 29251033 ~ 29346842 (+)
LOC111193374 NA other downstream 1316245 29256178 ~ 29256564 (+)
G94233 NA other downstream 1330370 29270303 ~ 29365656 (+)
G94241 NA other downstream 1442622 29382555 ~ 29383298 (+)

Expression


Co-expression Network